| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yjhC [C]
Identifier: 103487064
GI number: 103487064
Start: 1651406
End: 1652407
Strand: Reverse
Name: yjhC [C]
Synonym: Sala_1579
Alternate gene names: 103487064
Gene position: 1652407-1651406 (Counterclockwise)
Preceding gene: 103487065
Following gene: 103487063
Centisome position: 49.4
GC content: 63.97
Gene sequence:
>1002_bases ATGGTTCTGACCGATGCCGGGCCGCCGCGATGCCTTGTCATCGGGACAGGGTCGATCGGTCGGCGGCATGTGGCAAATCT GAAGAAACTGGCCCCCGGTGCGCAACTGGCGTTTTTCCGTCACGAGGCGCGACACGACGATTTTTCGTCCGCCATGCAGG CGCAGCTTTTCGACGCGCTGGAGGGGGCGATCGAATGGCGTCCGACGATCGCGATCGTCGCTTCGCCTTCGGACCGCCAT TTCGACACGCTGCCGGGGCTGCTCGCCGCGGGGGTTCCGACGCTCATCGAAAAACCGGTCGTGATCCGGGCGGAGGATTG CGCCTATCTTGAAAGCTTGTCCTGCGCTGACCTGCCGCCCACGCAGGTGGGCTGTGTCCTGCGGTTTACGGACATGGTGG TCCAGCTCAAACGCTGGATCGATGAAGGGCGGCTGGGCAGGCTGATCCGTGCTCGCTTCGAATGCGGGCAATATCTGCCC GACTGGCGCCCCGGTAGCGATTATCGGACATCCTATTCGGCCTCGCGGGAGCGCGGCGGCGGAGTCATTTTCGACCTTGT GCATGAGCTGGATCTGGCCGTGATGCTCTTTGGGGATTGCGAACTGCGCCATGTCATGCGCGACCGGCGAAGCTCGCTGC ATATCACGAGCGAGGACGTCGCCCTGCTCCATCTGCGCGCAGCCGACGGGCTACCGGTCGAGGTGGCTCTCGATTATGTG TCGCGCACTCCGACGCGCGGGATCGAGATCGTCGGCGAGGATGCAACGGCAGTGCTCGATTTCCGGGCGGCGACGCTTTC GCTGAAAACGCCCGGCAACGAAGAGCAAAGGCTGGTCGATACCGTGTCGACCGATGCGGCCTATCAGAGCGAGCTTGCCG AGTTGCTGGATGCGGCGCATGGGCACGGCACGACGCGGCTGCCGCTGAAAGAGGGGTTGAAGGCCACCCGGCTGGCGATC GCGGCCCATGAATATGTCGACAAGGGCGGGGACCGGAATTGA
Upstream 100 bases:
>100_bases TGCGCGAAACGGCGCCCGATGCCAGCTTCATTCCTGAGATATGGCAAGGGCACAAGGATGACGGCGCAGGTTTCTGGCAG GCGCTCGACCGTCTCGAACA
Downstream 100 bases:
>100_bases ACACCATCTGTACGATCTGCGCACGCGGAGGATCGCGCGGAGTGCCGGGAAAGAATATCCGCCCGCTGCTCGGCAAGCCG TTGATCGTCCATACGATCGA
Product: oxidoreductase-like protein
Products: NA
Alternate protein names: Oxidoreductase Domain-Containing Protein; Oxidoreductase Domain Protein; Oxidoreductase Protein; Dehydrogenase; Oxidoreductase-Like; Dehydrogenase-Like Protein; Oxidoreductase Gfo/Idh/MocA Family; Gfo/Idh/MocA Family Oxidoreductase; Myo-Inositol 2-Dehydrogenase; Oxidoreductase Family Protein; 3-Chlorobenzoate-3 4-Dioxygenase Dyhydrogenase-Like Protein; Flagellin Protein PtmF; Oxidoreductase GFO/Idh/MocA Family Protein; Oxidoreductase-Like Protein; GFO/IDH/MOCA Family Oxidoreductase; GFO/IDH/MOCA Family Oxidoreductase Protein
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MVLTDAGPPRCLVIGTGSIGRRHVANLKKLAPGAQLAFFRHEARHDDFSSAMQAQLFDALEGAIEWRPTIAIVASPSDRH FDTLPGLLAAGVPTLIEKPVVIRAEDCAYLESLSCADLPPTQVGCVLRFTDMVVQLKRWIDEGRLGRLIRARFECGQYLP DWRPGSDYRTSYSASRERGGGVIFDLVHELDLAVMLFGDCELRHVMRDRRSSLHITSEDVALLHLRAADGLPVEVALDYV SRTPTRGIEIVGEDATAVLDFRAATLSLKTPGNEEQRLVDTVSTDAAYQSELAELLDAAHGHGTTRLPLKEGLKATRLAI AAHEYVDKGGDRN
Sequences:
>Translated_333_residues MVLTDAGPPRCLVIGTGSIGRRHVANLKKLAPGAQLAFFRHEARHDDFSSAMQAQLFDALEGAIEWRPTIAIVASPSDRH FDTLPGLLAAGVPTLIEKPVVIRAEDCAYLESLSCADLPPTQVGCVLRFTDMVVQLKRWIDEGRLGRLIRARFECGQYLP DWRPGSDYRTSYSASRERGGGVIFDLVHELDLAVMLFGDCELRHVMRDRRSSLHITSEDVALLHLRAADGLPVEVALDYV SRTPTRGIEIVGEDATAVLDFRAATLSLKTPGNEEQRLVDTVSTDAAYQSELAELLDAAHGHGTTRLPLKEGLKATRLAI AAHEYVDKGGDRN >Mature_333_residues MVLTDAGPPRCLVIGTGSIGRRHVANLKKLAPGAQLAFFRHEARHDDFSSAMQAQLFDALEGAIEWRPTIAIVASPSDRH FDTLPGLLAAGVPTLIEKPVVIRAEDCAYLESLSCADLPPTQVGCVLRFTDMVVQLKRWIDEGRLGRLIRARFECGQYLP DWRPGSDYRTSYSASRERGGGVIFDLVHELDLAVMLFGDCELRHVMRDRRSSLHITSEDVALLHLRAADGLPVEVALDYV SRTPTRGIEIVGEDATAVLDFRAATLSLKTPGNEEQRLVDTVSTDAAYQSELAELLDAAHGHGTTRLPLKEGLKATRLAI AAHEYVDKGGDRN
Specific function: Unknown
COG id: COG0673
COG function: function code R; Predicted dehydrogenases and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.-.-.- [C]
Molecular weight: Translated: 36515; Mature: 36515
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLTDAGPPRCLVIGTGSIGRRHVANLKKLAPGAQLAFFRHEARHDDFSSAMQAQLFDAL CCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH EGAIEWRPTIAIVASPSDRHFDTLPGLLAAGVPTLIEKPVVIRAEDCAYLESLSCADLPP HHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHCCCEEEEECCHHHHHCCCCCCCCC TQVGCVLRFTDMVVQLKRWIDEGRLGRLIRARFECGQYLPDWRPGSDYRTSYSASRERGG HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCC GVIFDLVHELDLAVMLFGDCELRHVMRDRRSSLHITSEDVALLHLRAADGLPVEVALDYV CHHHHHHHHHCEEEEEECCHHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCHHHHHHHH SRTPTRGIEIVGEDATAVLDFRAATLSLKTPGNEEQRLVDTVSTDAAYQSELAELLDAAH HCCCCCCEEEECCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GHGTTRLPLKEGLKATRLAIAAHEYVDKGGDRN CCCCEECCHHHCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MVLTDAGPPRCLVIGTGSIGRRHVANLKKLAPGAQLAFFRHEARHDDFSSAMQAQLFDAL CCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH EGAIEWRPTIAIVASPSDRHFDTLPGLLAAGVPTLIEKPVVIRAEDCAYLESLSCADLPP HHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHCCCEEEEECCHHHHHCCCCCCCCC TQVGCVLRFTDMVVQLKRWIDEGRLGRLIRARFECGQYLPDWRPGSDYRTSYSASRERGG HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCC GVIFDLVHELDLAVMLFGDCELRHVMRDRRSSLHITSEDVALLHLRAADGLPVEVALDYV CHHHHHHHHHCEEEEEECCHHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCHHHHHHHH SRTPTRGIEIVGEDATAVLDFRAATLSLKTPGNEEQRLVDTVSTDAAYQSELAELLDAAH HCCCCCCEEEECCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GHGTTRLPLKEGLKATRLAIAAHEYVDKGGDRN CCCCEECCHHHCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA