| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is gutQ [C]
Identifier: 103487065
GI number: 103487065
Start: 1652398
End: 1654647
Strand: Reverse
Name: gutQ [C]
Synonym: Sala_1580
Alternate gene names: 103487065
Gene position: 1654647-1652398 (Counterclockwise)
Preceding gene: 103487066
Following gene: 103487064
Centisome position: 49.46
GC content: 59.33
Gene sequence:
>2250_bases GTGATCATTGAACGGAATATTGCACCGCTGATCGTCTTTGCCGAGGAAGACATTGTTTCGGCGCTTCGCAAGATCAGCGT CAATCAGCGCGGCTTTGTCCTGTGTGTTTCGGCGTCGGGAAAGCTTGAAGCCGTGCTGACTGACGGCGATGTGCGCCGTT GGCTGGTCGACGGCGGCCAGTTCGATTTCGGCGTCAGCGCGGCAATGGTCGCGAACAAGCAGTTTGTCGCTGCAAAGGAT GGAGCCAGCGAGGACGAGCTGAACGATCTTTTTTCGGATCGGGTGACATTCGTTCCCATCGTCGACGGGCAACGTCATCT GCGCGCCGTCGCCTTCAGGGGGCAGCCGGTGGTGCGGATCGGCGACCGGGTGATAGGCCCGGAGAGTCCGGCCTACATTA TTGCCGAGATCGGCAATAATCACAACGGCAGCATCGAACTCGCCAAGCGGCTGGTCGAGCTTGCCGTCGAGGCAGGCGCC GACTGCGCAAAGTTCCAGATGCGCGACATGTCGAGCCTGTATCGCAATGAGGGCGATTCCGATGACGCCAGCGCGGACCT CGGGGCGCAATATACGCTGGATCTCCTCTCGCGCTTTCAGCTGCCCGTCGATGAAATGTTCCAGGTGTTCGATTATTGCC ATGAACTGGGTATCCAGCCGTTATGCACGCCCTGGGATGAAGCCAGTCTGGCCCGGCTGGAAGCCTATGACATGCCGGCA TACAAGCTGGCTTCGGCCGATCTGACCAATCACCCGTTGTTGAGCGCGATGGCGCGAACGGGAAAGACGCTGATCTGTTC GACCGGCATGTCGACCCAAGGCGAGATCGAAAACGCGATTGCCGTCCTGAAGCGCCACACGGCGCCCTATGTTCTGCTGC ATTGCAATTCGACCTATCCGGCGCCGTTCAAGGATATTAATCTGGCCTATATCCGCAGGTTGGAGAAACTTTCGGGCGGG GTTGTCGGATATTCGGGGCACGAGCGGGGATATTTCATTCCCGTGGCGGCCGTCGCGATGGGGGCAAAGGTTATAGAGAA GCACTTTACCGTCGATCGGGGGATGGAAGGAAATGATCATCGGGTCAGCCTGCTGCCCGACGAGTTCTCGGCGATGGTGC GCGCCATCCGCGAAGTCGAGGAGGCCATGGGTTATGGTGGCGCGCGCGGCATCACCCAGGGTGAAATGATGAATCGCGAA GTCCTGGCAAAGAGTCTGGTTGCCGCGCGGCCGATCCGGGCGGGGCAGCAGATTGCCGACGAGGACATCCAGATCCGCAG TCCGGGCCAGGGGCTGCAACCCTATTTTCGTGCCGAGCTGGTCGGACGGATCGCAAAGCGGGATATGATAGAGGGAGATT TTTTCTTCCAGAGCGACCTCGCGGACGCGGTCGCCAGCGCGCGTGATTACCGGTTCGACCGCCCTTTCGGCGTGCCTGTG CGCTACCATGACCTGCAGAAGATGATCGGCGCCACCAATCTCGATCTTGTCGAGTTCCATCTGAGCTACAAGGACATGGA GCTGGATCCGGTCCGGATGCTGGACGGCGCAACGTTCGATATTGCGCTCGTTGTGCATAGTCCCGAACTGTTTGCCGGCG ACCATATCATGGATCTGTGTTCGGAGGATGATGTCTATCGCCAGCGTTCGATCGACGAATTGCAGCGCGTGATTGACATC ACACGGACGCTGAAACCCCATTTCACGAAATCGGCTCGTCCGCCGATCATCATCAACGCGGGCGGATTTTCCGCGGACGG TCCGATTACCGCGGAACGGCGACCTGCGATGTATGACCGCATCGCCGATGCCCTGTCGCGGCTCGACAAGGAAGGGGTGG AGATAATTCCGCAGACGATGCCGCCCTATCCGTGGCATTTCGGTGGGCAGCGCTACCATAACCTCTTCCTGTCCGCAGAG GACATCGTGCGTTTCTGTTCGGAACATGGATACCGGATTTGCCTCGACGTGTCGCATTCGGCGCTGGCGGCGACGCATCT GAAGACCAGTTTTCAGGAACTTCTGCGACAGGTTGGGCCGTACACATGCCATATGCATATCGTTGATGCAGCGGGGGTCG ACGGCGAAGGCCTGCAGATCGGCGATGGCACGGTCGATTTCGCCATGGTCGCCGATGTCCTGCGCGAAACGGCGCCCGAT GCCAGCTTCATTCCTGAGATATGGCAAGGGCACAAGGATGACGGCGCAGGTTTCTGGCAGGCGCTCGACCGTCTCGAACA ATGGTTCTGA
Upstream 100 bases:
>100_bases GCATCGCCTTGTACCGGATGCAGGAATGCGAAGGCTGGGAAATCGACACCGAAATCGACTTCGAGATCGTCGAAGCGCTG ATGAAGCAGGAACTCTCCAC
Downstream 100 bases:
>100_bases CCGATGCCGGGCCGCCGCGATGCCTTGTCATCGGGACAGGGTCGATCGGTCGGCGGCATGTGGCAAATCTGAAGAAACTG GCCCCCGGTGCGCAACTGGC
Product: N-acylneuraminate-9-phosphate synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 749; Mature: 749
Protein sequence:
>749_residues MIIERNIAPLIVFAEEDIVSALRKISVNQRGFVLCVSASGKLEAVLTDGDVRRWLVDGGQFDFGVSAAMVANKQFVAAKD GASEDELNDLFSDRVTFVPIVDGQRHLRAVAFRGQPVVRIGDRVIGPESPAYIIAEIGNNHNGSIELAKRLVELAVEAGA DCAKFQMRDMSSLYRNEGDSDDASADLGAQYTLDLLSRFQLPVDEMFQVFDYCHELGIQPLCTPWDEASLARLEAYDMPA YKLASADLTNHPLLSAMARTGKTLICSTGMSTQGEIENAIAVLKRHTAPYVLLHCNSTYPAPFKDINLAYIRRLEKLSGG VVGYSGHERGYFIPVAAVAMGAKVIEKHFTVDRGMEGNDHRVSLLPDEFSAMVRAIREVEEAMGYGGARGITQGEMMNRE VLAKSLVAARPIRAGQQIADEDIQIRSPGQGLQPYFRAELVGRIAKRDMIEGDFFFQSDLADAVASARDYRFDRPFGVPV RYHDLQKMIGATNLDLVEFHLSYKDMELDPVRMLDGATFDIALVVHSPELFAGDHIMDLCSEDDVYRQRSIDELQRVIDI TRTLKPHFTKSARPPIIINAGGFSADGPITAERRPAMYDRIADALSRLDKEGVEIIPQTMPPYPWHFGGQRYHNLFLSAE DIVRFCSEHGYRICLDVSHSALAATHLKTSFQELLRQVGPYTCHMHIVDAAGVDGEGLQIGDGTVDFAMVADVLRETAPD ASFIPEIWQGHKDDGAGFWQALDRLEQWF
Sequences:
>Translated_749_residues MIIERNIAPLIVFAEEDIVSALRKISVNQRGFVLCVSASGKLEAVLTDGDVRRWLVDGGQFDFGVSAAMVANKQFVAAKD GASEDELNDLFSDRVTFVPIVDGQRHLRAVAFRGQPVVRIGDRVIGPESPAYIIAEIGNNHNGSIELAKRLVELAVEAGA DCAKFQMRDMSSLYRNEGDSDDASADLGAQYTLDLLSRFQLPVDEMFQVFDYCHELGIQPLCTPWDEASLARLEAYDMPA YKLASADLTNHPLLSAMARTGKTLICSTGMSTQGEIENAIAVLKRHTAPYVLLHCNSTYPAPFKDINLAYIRRLEKLSGG VVGYSGHERGYFIPVAAVAMGAKVIEKHFTVDRGMEGNDHRVSLLPDEFSAMVRAIREVEEAMGYGGARGITQGEMMNRE VLAKSLVAARPIRAGQQIADEDIQIRSPGQGLQPYFRAELVGRIAKRDMIEGDFFFQSDLADAVASARDYRFDRPFGVPV RYHDLQKMIGATNLDLVEFHLSYKDMELDPVRMLDGATFDIALVVHSPELFAGDHIMDLCSEDDVYRQRSIDELQRVIDI TRTLKPHFTKSARPPIIINAGGFSADGPITAERRPAMYDRIADALSRLDKEGVEIIPQTMPPYPWHFGGQRYHNLFLSAE DIVRFCSEHGYRICLDVSHSALAATHLKTSFQELLRQVGPYTCHMHIVDAAGVDGEGLQIGDGTVDFAMVADVLRETAPD ASFIPEIWQGHKDDGAGFWQALDRLEQWF >Mature_749_residues MIIERNIAPLIVFAEEDIVSALRKISVNQRGFVLCVSASGKLEAVLTDGDVRRWLVDGGQFDFGVSAAMVANKQFVAAKD GASEDELNDLFSDRVTFVPIVDGQRHLRAVAFRGQPVVRIGDRVIGPESPAYIIAEIGNNHNGSIELAKRLVELAVEAGA DCAKFQMRDMSSLYRNEGDSDDASADLGAQYTLDLLSRFQLPVDEMFQVFDYCHELGIQPLCTPWDEASLARLEAYDMPA YKLASADLTNHPLLSAMARTGKTLICSTGMSTQGEIENAIAVLKRHTAPYVLLHCNSTYPAPFKDINLAYIRRLEKLSGG VVGYSGHERGYFIPVAAVAMGAKVIEKHFTVDRGMEGNDHRVSLLPDEFSAMVRAIREVEEAMGYGGARGITQGEMMNRE VLAKSLVAARPIRAGQQIADEDIQIRSPGQGLQPYFRAELVGRIAKRDMIEGDFFFQSDLADAVASARDYRFDRPFGVPV RYHDLQKMIGATNLDLVEFHLSYKDMELDPVRMLDGATFDIALVVHSPELFAGDHIMDLCSEDDVYRQRSIDELQRVIDI TRTLKPHFTKSARPPIIINAGGFSADGPITAERRPAMYDRIADALSRLDKEGVEIIPQTMPPYPWHFGGQRYHNLFLSAE DIVRFCSEHGYRICLDVSHSALAATHLKTSFQELLRQVGPYTCHMHIVDAAGVDGEGLQIGDGTVDFAMVADVLRETAPD ASFIPEIWQGHKDDGAGFWQALDRLEQWF
Specific function: Not Known. [C]
COG id: COG2089
COG function: function code M; Sialic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis spsE [H]
Homologues:
Organism=Homo sapiens, GI12056473, Length=324, Percent_Identity=33.641975308642, Blast_Score=186, Evalue=8e-47, Organism=Drosophila melanogaster, GI21357081, Length=339, Percent_Identity=34.2182890855457, Blast_Score=181, Evalue=2e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006190 - InterPro: IPR013785 - InterPro: IPR013132 - InterPro: IPR013974 [H]
Pfam domain/function: PF03102 NeuB; PF08666 SAF [H]
EC number: NA
Molecular weight: Translated: 83051; Mature: 83051
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS50844 AFP_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIERNIAPLIVFAEEDIVSALRKISVNQRGFVLCVSASGKLEAVLTDGDVRRWLVDGGQ CEECCCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCC FDFGVSAAMVANKQFVAAKDGASEDELNDLFSDRVTFVPIVDGQRHLRAVAFRGQPVVRI CCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECCCHHHEEEEECCCCEEEE GDRVIGPESPAYIIAEIGNNHNGSIELAKRLVELAVEAGADCAKFQMRDMSSLYRNEGDS CCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC DDASADLGAQYTLDLLSRFQLPVDEMFQVFDYCHELGIQPLCTPWDEASLARLEAYDMPA CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC YKLASADLTNHPLLSAMARTGKTLICSTGMSTQGEIENAIAVLKRHTAPYVLLHCNSTYP HHCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC APFKDINLAYIRRLEKLSGGVVGYSGHERGYFIPVAAVAMGAKVIEKHFTVDRGMEGNDH CCCCCCCHHHHHHHHHHCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC RVSLLPDEFSAMVRAIREVEEAMGYGGARGITQGEMMNREVLAKSLVAARPIRAGQQIAD EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCC EDIQIRSPGQGLQPYFRAELVGRIAKRDMIEGDFFFQSDLADAVASARDYRFDRPFGVPV CCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCC RYHDLQKMIGATNLDLVEFHLSYKDMELDPVRMLDGATFDIALVVHSPELFAGDHIMDLC HHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHCCCCEEEEEEEECCCHHCCCHHHHHH SEDDVYRQRSIDELQRVIDITRTLKPHFTKSARPPIIINAGGFSADGPITAERRPAMYDR CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHH IADALSRLDKEGVEIIPQTMPPYPWHFGGQRYHNLFLSAEDIVRFCSEHGYRICLDVSHS HHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHEECHHHHHHHHHHCCCEEEEECCCH ALAATHLKTSFQELLRQVGPYTCHMHIVDAAGVDGEGLQIGDGTVDFAMVADVLRETAPD HHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHCCCC ASFIPEIWQGHKDDGAGFWQALDRLEQWF CCCCHHHHCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MIIERNIAPLIVFAEEDIVSALRKISVNQRGFVLCVSASGKLEAVLTDGDVRRWLVDGGQ CEECCCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCC FDFGVSAAMVANKQFVAAKDGASEDELNDLFSDRVTFVPIVDGQRHLRAVAFRGQPVVRI CCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECCCHHHEEEEECCCCEEEE GDRVIGPESPAYIIAEIGNNHNGSIELAKRLVELAVEAGADCAKFQMRDMSSLYRNEGDS CCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC DDASADLGAQYTLDLLSRFQLPVDEMFQVFDYCHELGIQPLCTPWDEASLARLEAYDMPA CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC YKLASADLTNHPLLSAMARTGKTLICSTGMSTQGEIENAIAVLKRHTAPYVLLHCNSTYP HHCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC APFKDINLAYIRRLEKLSGGVVGYSGHERGYFIPVAAVAMGAKVIEKHFTVDRGMEGNDH CCCCCCCHHHHHHHHHHCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC RVSLLPDEFSAMVRAIREVEEAMGYGGARGITQGEMMNREVLAKSLVAARPIRAGQQIAD EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCC EDIQIRSPGQGLQPYFRAELVGRIAKRDMIEGDFFFQSDLADAVASARDYRFDRPFGVPV CCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCC RYHDLQKMIGATNLDLVEFHLSYKDMELDPVRMLDGATFDIALVVHSPELFAGDHIMDLC HHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHCCCCEEEEEEEECCCHHCCCHHHHHH SEDDVYRQRSIDELQRVIDITRTLKPHFTKSARPPIIINAGGFSADGPITAERRPAMYDR CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHH IADALSRLDKEGVEIIPQTMPPYPWHFGGQRYHNLFLSAEDIVRFCSEHGYRICLDVSHS HHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHEECHHHHHHHHHHCCCEEEEECCCH ALAATHLKTSFQELLRQVGPYTCHMHIVDAAGVDGEGLQIGDGTVDFAMVADVLRETAPD HHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHCCCC ASFIPEIWQGHKDDGAGFWQALDRLEQWF CCCCHHHHCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]