| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is tuaG [H]
Identifier: 103487055
GI number: 103487055
Start: 1642347
End: 1643105
Strand: Direct
Name: tuaG [H]
Synonym: Sala_1570
Alternate gene names: 103487055
Gene position: 1642347-1643105 (Clockwise)
Preceding gene: 103487054
Following gene: 103487075
Centisome position: 49.1
GC content: 60.08
Gene sequence:
>759_bases ATGTCCGACAATCTCGTTTCAATCATCACCCCCGCCTATAAGGCCGCCGACATCATTGCGGAGACGATTTGTTCGGTCCA GTCGCAAACCCATCGTGAGTGGGAAATGCTGATTGCCGAGGATTGCGGTCCTGACGAAACGCGCGCGATCGTTCGCGAGT TCGCCCGCGCCGACCCCAGGGTCAGGCTGCTCCAAATGCCGGTCAATGGCGGGCCGGCAGCCGCGCGCAATCTGGCGCTG TCCACGGCAAAGGGCCGGTGGCTTGCCTTTCTCGACAGCGACGACCTGTGGCTTCCCGAAAAGCTGGAGCGCCAACTGGC CTTTCATCGCACCCGCGACGACGCCGTGATCAGCTTTACCGGTTTCCGGCGCATCAACGCCGAGGGAAGCGAGACAGGGC GATACATCGGCGTGCCGCCTGTGATGGATTACAGGGCGCTGCTGGGAAACACGGCGATCGCCACCTCGACCGTCATCGTC GACCGGCAACAGTCGGGCGAGTTCAGAATGCAGAAGACCTATTATGACGATTTCGCATGCTGGCTGGCGCTGCTGCGTAA GGGAAAAGTTGCAATCGGGCTGGACGAGGACCTGATGCGCTATCGCGTCATGGCGCAATCGGTCAGCCGGAACAAGGGCA ACAGCGCAAGGCAGGTCTGGCTTGCCTATCGCAATATCGAGAAACTGTCGCCCTTGGCCGCCGCATGGTATTTTGCCCAA TATTCGGCACGCGCCTTCCTGAAATATCGCAGATTCTGA
Upstream 100 bases:
>100_bases GCGCCGATGAGGTGCGGACCTTCACCGACACGCTGACGTCATATCTGCGCGCCTGAAAAGGCGCGATCCCATTGATTTCT TCCGGCTGACACAAGGCATC
Downstream 100 bases:
>100_bases CCAGTTATCCAAGATCAGGGAATCAGAAGTGCTCGTTCGATCACGTCTGCTGCGGGATCTGCTCTGAAAAAGGCCCGGCG CGGTTCCGGAAAAACGCGCG
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSDNLVSIITPAYKAADIIAETICSVQSQTHREWEMLIAEDCGPDETRAIVREFARADPRVRLLQMPVNGGPAAARNLAL STAKGRWLAFLDSDDLWLPEKLERQLAFHRTRDDAVISFTGFRRINAEGSETGRYIGVPPVMDYRALLGNTAIATSTVIV DRQQSGEFRMQKTYYDDFACWLALLRKGKVAIGLDEDLMRYRVMAQSVSRNKGNSARQVWLAYRNIEKLSPLAAAWYFAQ YSARAFLKYRRF
Sequences:
>Translated_252_residues MSDNLVSIITPAYKAADIIAETICSVQSQTHREWEMLIAEDCGPDETRAIVREFARADPRVRLLQMPVNGGPAAARNLAL STAKGRWLAFLDSDDLWLPEKLERQLAFHRTRDDAVISFTGFRRINAEGSETGRYIGVPPVMDYRALLGNTAIATSTVIV DRQQSGEFRMQKTYYDDFACWLALLRKGKVAIGLDEDLMRYRVMAQSVSRNKGNSARQVWLAYRNIEKLSPLAAAWYFAQ YSARAFLKYRRF >Mature_251_residues SDNLVSIITPAYKAADIIAETICSVQSQTHREWEMLIAEDCGPDETRAIVREFARADPRVRLLQMPVNGGPAAARNLALS TAKGRWLAFLDSDDLWLPEKLERQLAFHRTRDDAVISFTGFRRINAEGSETGRYIGVPPVMDYRALLGNTAIATSTVIVD RQQSGEFRMQKTYYDDFACWLALLRKGKVAIGLDEDLMRYRVMAQSVSRNKGNSARQVWLAYRNIEKLSPLAAAWYFAQY SARAFLKYRRF
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1788372, Length=108, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1790044, Length=102, Percent_Identity=35.2941176470588, Blast_Score=65, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 28654; Mature: 28523
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDNLVSIITPAYKAADIIAETICSVQSQTHREWEMLIAEDCGPDETRAIVREFARADPR CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCC VRLLQMPVNGGPAAARNLALSTAKGRWLAFLDSDDLWLPEKLERQLAFHRTRDDAVISFT EEEEEECCCCCCHHHHHHEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEE GFRRINAEGSETGRYIGVPPVMDYRALLGNTAIATSTVIVDRQQSGEFRMQKTYYDDFAC CEEEECCCCCCCCCEECCCCHHHHHHHHCCCHHHEEEEEEECCCCCCEEEHHHHHHHHHH WLALLRKGKVAIGLDEDLMRYRVMAQSVSRNKGNSARQVWLAYRNIEKLSPLAAAWYFAQ HHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YSARAFLKYRRF HHHHHHHHHCCC >Mature Secondary Structure SDNLVSIITPAYKAADIIAETICSVQSQTHREWEMLIAEDCGPDETRAIVREFARADPR CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCC VRLLQMPVNGGPAAARNLALSTAKGRWLAFLDSDDLWLPEKLERQLAFHRTRDDAVISFT EEEEEECCCCCCHHHHHHEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEE GFRRINAEGSETGRYIGVPPVMDYRALLGNTAIATSTVIVDRQQSGEFRMQKTYYDDFAC CEEEECCCCCCCCCEECCCCHHHHHHHHCCCHHHEEEEEEECCCCCCEEEHHHHHHHHHH WLALLRKGKVAIGLDEDLMRYRVMAQSVSRNKGNSARQVWLAYRNIEKLSPLAAAWYFAQ HHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YSARAFLKYRRF HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10048024; 9384377 [H]