| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is lip2 [H]
Identifier: 103487034
GI number: 103487034
Start: 1616922
End: 1617869
Strand: Direct
Name: lip2 [H]
Synonym: Sala_1549
Alternate gene names: 103487034
Gene position: 1616922-1617869 (Clockwise)
Preceding gene: 103487028
Following gene: 103487035
Centisome position: 48.34
GC content: 65.3
Gene sequence:
>948_bases ATGACCGACGGCACCCCCCATTATACGCGCCCCGATGTGGCGGCTTTTCTGGCCTTTCTGAATATGCAGGAAGGCCCGAA GATGGAGGAGATGCCGCCAGAGGGCGCGCGGGAGATGTTCCGGGCGATGGGCCAGATCGCCGATGTTCCGCGCGGCGAGA TAGCCCATGTCGAGGATCGCACCATCCCCGGACCCGCAGGCGCGCTTCCGATCCGGATCTACGATAATCGCCCCGATCGC GAGCCCGGCCCGGTGATGGTCTTCTATCACGGTGGCGGCTGGGTGATCGGCGATCTCGACACGCACGATCCCTATTGCGC CGAGGCGGCGCGGCAGCTCGACATGCCCGTGATCGCCGTCGATTACCGCCTCGCCCCCGAACATCCCTTTCCCGCGGCGC CCGAAGATTGCGAAGCGGCAACGCGCTGGGTCGCCGACAATGTCCCCTGTACCGGTCTCGTGCTTTCGGGCGAGAGCGCG GGCGGCAATCTGACGATCGCGACCGCGCTGACGTTGCGCGACAAGCCGGCGTCGAAACCGGTCATCGCCATCCATCCCAT CTATCCCGCCGTGACGACGCGCGACGACTGGCAAAGCTATCGTGATTTCGGCGAGGGCCATTTGCTCACCAAAGGCGGCA TGGCCTGGTTCGGCAATCATTATGCCGCGGATCCCGGAGACTATCGGGCTTCGCCGCTCGATTTCCCGGCGGAAGGCCTG CCGCCGACGCTGCTGGTCACCGCGGGGCTCGACCCGCTGCGCGACCAGGGCCGCGCCTATGCCGCGAAGCTGATCGAGGC GGGCGTGCCGACCAGCTTTCGCGAGGCAAAGGGCAATATCCACGGCTATATAAACCTGGCGCAAGGCATCCCCAGCGCAA AGGACGATATTCGCGGCGCCCTCACCATATTGAAAGCAATCGTCGCCGACGCTAACGCCGCGGCATGA
Upstream 100 bases:
>100_bases GCCGCAAAGGGTGACGCATGGGTGAGTTTCGATTTGCCATTGAATTTGCGGTGTCGATAGCGAATAGCCGGGCGACGATG GCGATCAGGGAGAAACGCGA
Downstream 100 bases:
>100_bases TCGACCACGACAAGCTTCCCTATCGCCCCTGCGCGGGCGTCATGCTCGCCAACCGCGACGGCCGCGTCTTCGTCGGCCAG CGGCTCGATACGTCGAGCGA
Product: Alpha/beta hydrolase fold-3
Products: NA
Alternate protein names: Triacylglycerol lipase [H]
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MTDGTPHYTRPDVAAFLAFLNMQEGPKMEEMPPEGAREMFRAMGQIADVPRGEIAHVEDRTIPGPAGALPIRIYDNRPDR EPGPVMVFYHGGGWVIGDLDTHDPYCAEAARQLDMPVIAVDYRLAPEHPFPAAPEDCEAATRWVADNVPCTGLVLSGESA GGNLTIATALTLRDKPASKPVIAIHPIYPAVTTRDDWQSYRDFGEGHLLTKGGMAWFGNHYAADPGDYRASPLDFPAEGL PPTLLVTAGLDPLRDQGRAYAAKLIEAGVPTSFREAKGNIHGYINLAQGIPSAKDDIRGALTILKAIVADANAAA
Sequences:
>Translated_315_residues MTDGTPHYTRPDVAAFLAFLNMQEGPKMEEMPPEGAREMFRAMGQIADVPRGEIAHVEDRTIPGPAGALPIRIYDNRPDR EPGPVMVFYHGGGWVIGDLDTHDPYCAEAARQLDMPVIAVDYRLAPEHPFPAAPEDCEAATRWVADNVPCTGLVLSGESA GGNLTIATALTLRDKPASKPVIAIHPIYPAVTTRDDWQSYRDFGEGHLLTKGGMAWFGNHYAADPGDYRASPLDFPAEGL PPTLLVTAGLDPLRDQGRAYAAKLIEAGVPTSFREAKGNIHGYINLAQGIPSAKDDIRGALTILKAIVADANAAA >Mature_314_residues TDGTPHYTRPDVAAFLAFLNMQEGPKMEEMPPEGAREMFRAMGQIADVPRGEIAHVEDRTIPGPAGALPIRIYDNRPDRE PGPVMVFYHGGGWVIGDLDTHDPYCAEAARQLDMPVIAVDYRLAPEHPFPAAPEDCEAATRWVADNVPCTGLVLSGESAG GNLTIATALTLRDKPASKPVIAIHPIYPAVTTRDDWQSYRDFGEGHLLTKGGMAWFGNHYAADPGDYRASPLDFPAEGLP PTLLVTAGLDPLRDQGRAYAAKLIEAGVPTSFREAKGNIHGYINLAQGIPSAKDDIRGALTILKAIVADANAAA
Specific function: Has An Esterase Activity. Triacetyl Glycerol (Triacetin) Is A Substrate Of The Enzyme. [C]
COG id: COG0657
COG function: function code I; Esterase/lipase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'GDXG' lipolytic enzyme family [H]
Homologues:
Organism=Homo sapiens, GI21328446, Length=101, Percent_Identity=40.5940594059406, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI68299767, Length=194, Percent_Identity=31.9587628865979, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI206597554, Length=288, Percent_Identity=25.6944444444444, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI157041239, Length=118, Percent_Identity=33.8983050847458, Blast_Score=72, Evalue=5e-13, Organism=Escherichia coli, GI1786682, Length=258, Percent_Identity=28.6821705426357, Blast_Score=93, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17567059, Length=129, Percent_Identity=35.6589147286822, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI72001146, Length=171, Percent_Identity=30.9941520467836, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115533410, Length=97, Percent_Identity=37.1134020618557, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115533412, Length=97, Percent_Identity=37.1134020618557, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17540028, Length=144, Percent_Identity=34.7222222222222, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71996133, Length=143, Percent_Identity=30.0699300699301, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24656084, Length=105, Percent_Identity=38.0952380952381, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24656076, Length=105, Percent_Identity=38.0952380952381, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI20130169, Length=105, Percent_Identity=38.0952380952381, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013094 - InterPro: IPR002168 [H]
Pfam domain/function: PF07859 Abhydrolase_3 [H]
EC number: =3.1.1.3 [H]
Molecular weight: Translated: 33829; Mature: 33697
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDGTPHYTRPDVAAFLAFLNMQEGPKMEEMPPEGAREMFRAMGQIADVPRGEIAHVEDR CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC TIPGPAGALPIRIYDNRPDREPGPVMVFYHGGGWVIGDLDTHDPYCAEAARQLDMPVIAV CCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHCCCCEEEE DYRLAPEHPFPAAPEDCEAATRWVADNVPCTGLVLSGESAGGNLTIATALTLRDKPASKP EEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCC VIAIHPIYPAVTTRDDWQSYRDFGEGHLLTKGGMAWFGNHYAADPGDYRASPLDFPAEGL EEEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PPTLLVTAGLDPLRDQGRAYAAKLIEAGVPTSFREAKGNIHGYINLAQGIPSAKDDIRGA CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCCCCCCCHHHHHHH LTILKAIVADANAAA HHHHHHHHHCCCCCC >Mature Secondary Structure TDGTPHYTRPDVAAFLAFLNMQEGPKMEEMPPEGAREMFRAMGQIADVPRGEIAHVEDR CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC TIPGPAGALPIRIYDNRPDREPGPVMVFYHGGGWVIGDLDTHDPYCAEAARQLDMPVIAV CCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHCCCCEEEE DYRLAPEHPFPAAPEDCEAATRWVADNVPCTGLVLSGESAGGNLTIATALTLRDKPASKP EEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCC VIAIHPIYPAVTTRDDWQSYRDFGEGHLLTKGGMAWFGNHYAADPGDYRASPLDFPAEGL EEEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PPTLLVTAGLDPLRDQGRAYAAKLIEAGVPTSFREAKGNIHGYINLAQGIPSAKDDIRGA CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCCCCCCCHHHHHHH LTILKAIVADANAAA HHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1907455 [H]