| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is pcaK [H]
Identifier: 103486995
GI number: 103486995
Start: 1574024
End: 1575583
Strand: Direct
Name: pcaK [H]
Synonym: Sala_1510
Alternate gene names: 103486995
Gene position: 1574024-1575583 (Clockwise)
Preceding gene: 103486994
Following gene: 103487007
Centisome position: 47.05
GC content: 63.01
Gene sequence:
>1560_bases ATGGTAGATAATGGACGCAGCCCCTGGCTCTTCCTGATCGGGGTAACAGCGGTAACAATCGGCGTGGTGGCCCATATGCC GATGTTCTGGATGGGGCGCGATATCGGTTTCCGCATGGCCGGAATGCCGATGGACGGCATGATGATCGCCGGTATGGCGC TCATCGTCGCGGGGATCGGCGTGGCCGCATGGGGCTTGCTTCCGGCAAACCTCGCCCAACAGGTCGCTGCCGCTGACCGC CTGTCGGTCTCGGCGCCCGAGGATGCTCCCCTGTCCGCAGCGCATTGGCGATTGATGGCAGCCCTGGTTGTCGCGCTCAT CATCGACATCATGAAACCCGCGAGCCTCGGTTTCGTGATTCCCGGAATGATGGATGAATATGGCCTGTCGCGCGAAACCG TTTCGCTCGTTCCCTTCGCGGCGCTGGCGGGAACGGTGACGGGATCGATCGTCTGGGGCGCCGTTGCCGATGTTTACGGC CGCAAGGCGACCATATTGTTGTCGGCCGTAATGTTCGTGGGCACTTCGGTTTGCGGCACAATGCCGTCATTGGCTTGGAA CATCGTCATGTGTTTCATGATGGGGGCTGCCGCAGGCGGGATGCTGCCGGTTACCTATGCCCTTCTTGCGGAGATGATGC CCAGTCGCCACCGGGGCTGGAGCCTGGTGCTCGTGGGCGGGCTGGGCGCGGCCGGTGGCTACGTCGCTGCCAGCCTGGTT GCCGCATGGCTGGAGCCGCTGCTGAGCTGGCGAATTCTTTGGCTCGTCAATTTGCCGAGCGGTCTTATCCTTGTCGCGCT CGGCGTCTTCATTCCCGAGTCGGCCAAGTTTCTCGTGGCGCGCGGTCGGCACGAAGAAGCCCGGCGGATCATGGCGCGCT TCGGTTCGAGCTTGCATATGGCTGACCGGGGACCGCCCCGCCCGCGCCGGGATTCGCTTCAGCGACCCGACCTTGCTGGC AGCATGATGGCGCTGAACCTGACGGCCATCGCATGGAGTCTCGTGAATTTCGGCTTGTTGCTTTGGCTGCCAGCCGAACT TGTGGCGCGCGGATACAGCATGACATCGTCGAGCCGCCTGCTTGCCGATTCCGCGCTTGTCGCCCTTCCCACCGTCGTTT TCGTCGCCTGGATTTATCACGCCTGGAGCACGAAATTGTCGCTGTTTGCAGCATCGCTTGCAACGCTTGCGGGCCTTGGC GGGATGCTCTGGTTCGCGCTGGCCGAAAACGCTTCGCCATTCCTGCCCGCGGCGCTGCTCATCATCGGCAGCAACGCCAT CATTGCGATGCTGCTTCCCTACAGCGCCGAGAGTTTTCCGCTGAGGGTTCGCGGTCGCAACACCGGATGGGTCGCGGCAT CCAGCAAACTGGGCGGCGTATGTGCGCAGGGACTCGCCATATTCGCCATCGTCCCGTCGCTGGCGGCAAGCATATTGACG ATTATGCCCGTGATGGCGGCATCGCTCGTTCTGCTCGCCCGTTACGGCCGCGAAACGCGAGGGAGCGACCTGCGCGATCT CGACCCGGAGGGACATGTCTTCGACAAGGCCGGGCTCTGA
Upstream 100 bases:
>100_bases AGAAAAAGGAGGCGTGTCGCGAGTTCCCTGTCGACGTGGGCGCGCCATAATGACACGGTGATTCAGGCATGGTGCTGGCC CTCAATTTTCCCGGGACGAT
Downstream 100 bases:
>100_bases AAGATTGCGGTCGACGGAAATCGGCGACCGGACGACATATCGCCCCGGTCTGGACGCAAGGTCGTCCCTGCCACGAGGCA CAGAAAGGCGGTCGCCCGGT
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIGVAAWGLLPANLAQQVAAADR LSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVIPGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYG RKATILLSAVMFVGTSVCGTMPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHMADRGPPRPRRDSLQRPDLAG SMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRLLADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLG GMLWFALAENASPFLPAALLIIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL
Sequences:
>Translated_519_residues MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIGVAAWGLLPANLAQQVAAADR LSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVIPGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYG RKATILLSAVMFVGTSVCGTMPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHMADRGPPRPRRDSLQRPDLAG SMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRLLADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLG GMLWFALAENASPFLPAALLIIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL >Mature_519_residues MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIGVAAWGLLPANLAQQVAAADR LSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVIPGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYG RKATILLSAVMFVGTSVCGTMPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHMADRGPPRPRRDSLQRPDLAG SMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRLLADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLG GMLWFALAENASPFLPAALLIIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI24308167, Length=451, Percent_Identity=23.9467849223947, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI166197673, Length=345, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI1788074, Length=257, Percent_Identity=28.4046692607004, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI87082159, Length=400, Percent_Identity=25.5, Blast_Score=62, Evalue=7e-11, Organism=Escherichia coli, GI1786229, Length=238, Percent_Identity=25.2100840336134, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI32564663, Length=406, Percent_Identity=24.6305418719212, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640198, Length=210, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI24640196, Length=210, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI24640200, Length=210, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI19922874, Length=253, Percent_Identity=26.8774703557312, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI28573097, Length=215, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24668440, Length=338, Percent_Identity=23.9644970414201, Blast_Score=65, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004746 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 54785; Mature: 54785
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 6.0 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIG CCCCCCCCEEEEHHHHHHHHHHHHHCCHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHH VAAWGLLPANLAQQVAAADRLSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVI HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC PGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYGRKATILLSAVMFVGTSVCGT CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC MPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHM HHHHHHHHHHEEHHEEECCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCEEE ADRGPPRPRRDSLQRPDLAGSMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH LADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLGGMLWFALAENASPFLPAALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH IIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT HCCCCCEEEEEECCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVDNGRSPWLFLIGVTAVTIGVVAHMPMFWMGRDIGFRMAGMPMDGMMIAGMALIVAGIG CCCCCCCCEEEEHHHHHHHHHHHHHCCHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHH VAAWGLLPANLAQQVAAADRLSVSAPEDAPLSAAHWRLMAALVVALIIDIMKPASLGFVI HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC PGMMDEYGLSRETVSLVPFAALAGTVTGSIVWGAVADVYGRKATILLSAVMFVGTSVCGT CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC MPSLAWNIVMCFMMGAAAGGMLPVTYALLAEMMPSRHRGWSLVLVGGLGAAGGYVAASLV HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH AAWLEPLLSWRILWLVNLPSGLILVALGVFIPESAKFLVARGRHEEARRIMARFGSSLHM HHHHHHHHHHEEHHEEECCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCEEE ADRGPPRPRRDSLQRPDLAGSMMALNLTAIAWSLVNFGLLLWLPAELVARGYSMTSSSRL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH LADSALVALPTVVFVAWIYHAWSTKLSLFAASLATLAGLGGMLWFALAENASPFLPAALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH IIGSNAIIAMLLPYSAESFPLRVRGRNTGWVAASSKLGGVCAQGLAIFAIVPSLAASILT HCCCCCEEEEEECCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH IMPVMAASLVLLARYGRETRGSDLRDLDPEGHVFDKAGL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8063101 [H]