| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486977
Identifier: 103486977
GI number: 103486977
Start: 1555158
End: 1555484
Strand: Reverse
Name: 103486977
Synonym: Sala_1492
Alternate gene names: NA
Gene position: 1555484-1555158 (Counterclockwise)
Preceding gene: 103486982
Following gene: 103486975
Centisome position: 46.5
GC content: 57.19
Gene sequence:
>327_bases ATGATCAAGGCTGAATGGGGCACGAAACGCAGCTGCCCGAAATGCGCCACGCGATTCTATGATTTGACCAAGGATGATCC GGTCAGCTGCATCAACTGCGGCTATTCGTGGATTCCGGAATCGGTGCTGAAATCAAAGCAGCCGATGCCGTTCGAGGAAG CCGAGAAGCCGGGCAAGATCGCCAAGGACGATGTGGCGGCCGACGAGGATCTGGATCTGGATGTCGATGTTGACGAGGAC AGCGATTCGCCCGACAATGACGTCGATCTTGGCGGCGACGACGATCTGGGCGTTGCGACCGGCGATGATGAAGACGACGA AAGCTGA
Upstream 100 bases:
>100_bases TGCAATCTGGCAAGGCGCACGCCGATTTGACGGATAGCTATTCAGGCGTCGTCGTTCTTCCGATATTTTTATCCTGTTTC CAAAGGATTATGAGGCTTTT
Downstream 100 bases:
>100_bases TCGCCTTTTTGCGGCGGCAAAAACTTCGTTGAAAGATGATTTCGCCTCTTGCATCGCCCGGCGGCGCTGCTAAAGGCGGC GTCCCGGTCGCGCCGCCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 108; Mature: 108
Protein sequence:
>108_residues MIKAEWGTKRSCPKCATRFYDLTKDDPVSCINCGYSWIPESVLKSKQPMPFEEAEKPGKIAKDDVAADEDLDLDVDVDED SDSPDNDVDLGGDDDLGVATGDDEDDES
Sequences:
>Translated_108_residues MIKAEWGTKRSCPKCATRFYDLTKDDPVSCINCGYSWIPESVLKSKQPMPFEEAEKPGKIAKDDVAADEDLDLDVDVDED SDSPDNDVDLGGDDDLGVATGDDEDDES >Mature_108_residues MIKAEWGTKRSCPKCATRFYDLTKDDPVSCINCGYSWIPESVLKSKQPMPFEEAEKPGKIAKDDVAADEDLDLDVDVDED SDSPDNDVDLGGDDDLGVATGDDEDDES
Specific function: Unknown
COG id: COG4530
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11821; Mature: 11821
Theoretical pI: Translated: 3.70; Mature: 3.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKAEWGTKRSCPKCATRFYDLTKDDPVSCINCGYSWIPESVLKSKQPMPFEEAEKPGKI CCCCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHCCCCCCCHHCCCCCCCC AKDDVAADEDLDLDVDVDEDSDSPDNDVDLGGDDDLGVATGDDEDDES CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIKAEWGTKRSCPKCATRFYDLTKDDPVSCINCGYSWIPESVLKSKQPMPFEEAEKPGKI CCCCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHCCCCCCCHHCCCCCCCC AKDDVAADEDLDLDVDVDEDSDSPDNDVDLGGDDDLGVATGDDEDDES CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA