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The map label for this gene is 103486968

Identifier: 103486968

GI number: 103486968

Start: 1540612

End: 1541913

Strand: Reverse

Name: 103486968

Synonym: Sala_1483

Alternate gene names: NA

Gene position: 1541913-1540612 (Counterclockwise)

Preceding gene: 103486969

Following gene: 103486964

Centisome position: 46.09

GC content: 70.28

Gene sequence:

>1302_bases
ATGCTTGCCTCGTCGGTGAACTTCGCGGACAAGACGGACATGGCAATGGAAGACATCCATAGGGCAATCGAGGCGGTTTT
CCGCATCGAGCGGGCGAGGTTGATTGCCGGTCTTGCCCGCCTGACCCGCGACGTCGACCGCGCCGAGGAACTGGCGCAGG
ATGCGCTGCTCGTCGCGCTGACCGAGTGGCCGAGGGGCGGCGTTCCGGACAATCCCGGCGCGTGGCTCATGACTGCGGCG
AAGCGGCGCGCGATCGACGGCGTTCGCCACCATGCGATGCGGACGCGCAAACATGCCGAGATTGCCCGCGAACTGGACGA
GGAGCGCGACATGAGCGCGGAGGCCGTCGAAGCGGCGCTGGACGATCCGCTGGGCGACGAACTGCTCGGGCTGATCTTTG
CCGCCTGCCACCCCGTGATTTCGCCCGACGGACGCGCCGCGCTGACGCTACGGCTCGTTGGCGGGCTGACGGTCGAGGAG
ATTGCGCGGGCTTTCCTGTCGAACGAGGCGACGATCGCGGCGCGGATCACCCGCGCCAAGAAAGCGATCGCCAAGGCGGG
CGTGGCGTTCGAGGTGCCGCGCGGCGCCGAGCTGGCGGCGCGCCTGCCGTCGGTGCTGGAAGTCGTCTATCTGATTTTCA
ACGAAGGCTATGCCGCCACCGCGGGACCGGCGCTGGTGCGGCCGCCGCTCTGCGCCGAGGCGCTGCGACTGGGGCGCATC
CTCGCCGCGCTGATGCCCGATGAGCCGGAAGTGCTGGGCCTGTTGGCGCTGATGGAGATTCAGGCGTCGCGACTGGCGGC
GCGCGCCGGGCCGGACGGCAGGTTCGTGCCGCTGACCGAACATAACCGGGCGCGCTGGGACCAACTGCTCATCCGCCGCG
GGTTGAACGCGCTGGCGCGGGTCGAGGCGCTGGGAGGCGCGGGCGGACCCTATGCGTTGCAGGCGGCGCTCGCGGCCTGT
CATGCCAGGGCGCGGCGCGCCGAGGACACCGACTGGCGGCGGATCGCCGCGCTTTATGATCGGTTGGGACAGGTGATGCC
ATCGCCGGTGGTCGAACTCAACCGGGCGATCGCGCACAGCATGGCGTTCGGTCCCGAAGCGGGGCTGGCGCTGGTTGATA
CGCTCGCCGACGCAGCGGTGCTCCGCAACTATGCCCCGCTACCCGCGGCGCGCGGCGATTTCCTGCTGCGCGCCGGTCGC
AAAGCCGAGGCCAAAGGCGCGTTCGAGGCGGCGGCGGCGCTGTCGGCCAATGAGCGTGAGCGCGAATGGCTGCTCGCACG
GGCGGCCGCCTGCGCCAACTAG

Upstream 100 bases:

>100_bases
AATGGAGGATTTCGGCGACGCGGTGACCCCCGAGATCGCGGCGCGCGAAGAACGGCTGCGCGATCAACTGGCGAACGAAT
AAGCCGTTCAGCCCTCTGCC

Downstream 100 bases:

>100_bases
GTTCAGGACCCTAGCCGATTGGATGCCCGATCATTCGGGCATGGCATCGGCAACGCGCACCTTTTCGGCGCGCAATTTTT
CGGTGTGGAGCAGCTTGTCG

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MLASSVNFADKTDMAMEDIHRAIEAVFRIERARLIAGLARLTRDVDRAEELAQDALLVALTEWPRGGVPDNPGAWLMTAA
KRRAIDGVRHHAMRTRKHAEIARELDEERDMSAEAVEAALDDPLGDELLGLIFAACHPVISPDGRAALTLRLVGGLTVEE
IARAFLSNEATIAARITRAKKAIAKAGVAFEVPRGAELAARLPSVLEVVYLIFNEGYAATAGPALVRPPLCAEALRLGRI
LAALMPDEPEVLGLLALMEIQASRLAARAGPDGRFVPLTEHNRARWDQLLIRRGLNALARVEALGGAGGPYALQAALAAC
HARARRAEDTDWRRIAALYDRLGQVMPSPVVELNRAIAHSMAFGPEAGLALVDTLADAAVLRNYAPLPAARGDFLLRAGR
KAEAKGAFEAAAALSANEREREWLLARAAACAN

Sequences:

>Translated_433_residues
MLASSVNFADKTDMAMEDIHRAIEAVFRIERARLIAGLARLTRDVDRAEELAQDALLVALTEWPRGGVPDNPGAWLMTAA
KRRAIDGVRHHAMRTRKHAEIARELDEERDMSAEAVEAALDDPLGDELLGLIFAACHPVISPDGRAALTLRLVGGLTVEE
IARAFLSNEATIAARITRAKKAIAKAGVAFEVPRGAELAARLPSVLEVVYLIFNEGYAATAGPALVRPPLCAEALRLGRI
LAALMPDEPEVLGLLALMEIQASRLAARAGPDGRFVPLTEHNRARWDQLLIRRGLNALARVEALGGAGGPYALQAALAAC
HARARRAEDTDWRRIAALYDRLGQVMPSPVVELNRAIAHSMAFGPEAGLALVDTLADAAVLRNYAPLPAARGDFLLRAGR
KAEAKGAFEAAAALSANEREREWLLARAAACAN
>Mature_433_residues
MLASSVNFADKTDMAMEDIHRAIEAVFRIERARLIAGLARLTRDVDRAEELAQDALLVALTEWPRGGVPDNPGAWLMTAA
KRRAIDGVRHHAMRTRKHAEIARELDEERDMSAEAVEAALDDPLGDELLGLIFAACHPVISPDGRAALTLRLVGGLTVEE
IARAFLSNEATIAARITRAKKAIAKAGVAFEVPRGAELAARLPSVLEVVYLIFNEGYAATAGPALVRPPLCAEALRLGRI
LAALMPDEPEVLGLLALMEIQASRLAARAGPDGRFVPLTEHNRARWDQLLIRRGLNALARVEALGGAGGPYALQAALAAC
HARARRAEDTDWRRIAALYDRLGQVMPSPVVELNRAIAHSMAFGPEAGLALVDTLADAAVLRNYAPLPAARGDFLLRAGR
KAEAKGAFEAAAALSANEREREWLLARAAACAN

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 46486; Mature: 46486

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASSVNFADKTDMAMEDIHRAIEAVFRIERARLIAGLARLTRDVDRAEELAQDALLVAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
TEWPRGGVPDNPGAWLMTAAKRRAIDGVRHHAMRTRKHAEIARELDEERDMSAEAVEAAL
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
DDPLGDELLGLIFAACHPVISPDGRAALTLRLVGGLTVEEIARAFLSNEATIAARITRAK
CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHCCCCHHHHHHHHHCCCCHHHHHHHHHH
KAIAKAGVAFEVPRGAELAARLPSVLEVVYLIFNEGYAATAGPALVRPPLCAEALRLGRI
HHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
LAALMPDEPEVLGLLALMEIQASRLAARAGPDGRFVPLTEHNRARWDQLLIRRGLNALAR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
VEALGGAGGPYALQAALAACHARARRAEDTDWRRIAALYDRLGQVMPSPVVELNRAIAHS
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
MAFGPEAGLALVDTLADAAVLRNYAPLPAARGDFLLRAGRKAEAKGAFEAAAALSANERE
HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHH
REWLLARAAACAN
HHHHHHHHHHHCC
>Mature Secondary Structure
MLASSVNFADKTDMAMEDIHRAIEAVFRIERARLIAGLARLTRDVDRAEELAQDALLVAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
TEWPRGGVPDNPGAWLMTAAKRRAIDGVRHHAMRTRKHAEIARELDEERDMSAEAVEAAL
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
DDPLGDELLGLIFAACHPVISPDGRAALTLRLVGGLTVEEIARAFLSNEATIAARITRAK
CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHCCCCHHHHHHHHHCCCCHHHHHHHHHH
KAIAKAGVAFEVPRGAELAARLPSVLEVVYLIFNEGYAATAGPALVRPPLCAEALRLGRI
HHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
LAALMPDEPEVLGLLALMEIQASRLAARAGPDGRFVPLTEHNRARWDQLLIRRGLNALAR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
VEALGGAGGPYALQAALAACHARARRAEDTDWRRIAALYDRLGQVMPSPVVELNRAIAHS
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
MAFGPEAGLALVDTLADAAVLRNYAPLPAARGDFLLRAGRKAEAKGAFEAAAALSANERE
HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHH
REWLLARAAACAN
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]