Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486969

Identifier: 103486969

GI number: 103486969

Start: 1541932

End: 1542363

Strand: Reverse

Name: 103486969

Synonym: Sala_1484

Alternate gene names: NA

Gene position: 1542363-1541932 (Counterclockwise)

Preceding gene: 103486970

Following gene: 103486968

Centisome position: 46.11

GC content: 61.57

Gene sequence:

>432_bases
ATGCGTGTGATGGTGTTCGTGAAGGCGACCGAGGACAGCGAAAAGGGTCTGCCGCCAACCGAGGAAATGACCGCGATGTT
CGAGGCGATGGGCAAGTTCAACGAGGAACTCGTCAACGCCGGGGTGATGGTCGCGGGCGACGGGCTGAAGCCCTCCTCGT
TCGGCAAGCGCATTCATTTCGACGGTCCGAACCGCACGGTGACCGACGGTCCTTTCGCCGAAGCGCGCGAACTGGTCGCC
GGTTACTGGATCTGGGAAGTCAAGGACATGGACGAAGCGGTCGCCTGGGCCAAACGCTGCCCCAACCCGATGATGGGACC
GAGCGATCTGGAAATTCGGCCCTTCTATGAAATGGAGGATTTCGGCGACGCGGTGACCCCCGAGATCGCGGCGCGCGAAG
AACGGCTGCGCGATCAACTGGCGAACGAATAA

Upstream 100 bases:

>100_bases
CCCGACGCGCCGCGGATTTATTCGACTGTCGATTCTGACCGGGTTCGTTCGTCGTCAGCATGAGAGGCCGTTGTTGGCCT
CGGTAACAAGGAGATGGCAA

Downstream 100 bases:

>100_bases
GCCGTTCAGCCCTCTGCCATGCTTGCCTCGTCGGTGAACTTCGCGGACAAGACGGACATGGCAATGGAAGACATCCATAG
GGCAATCGAGGCGGTTTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: YCII-Related Protein; DGPF Domain-Containing Protein; YCII-Like Protein; YCII-Related; Dgpfaetke; DGPFAETKE Domain-Containing Protein; Dgpfaetke Family Protein; DGPF Domain-Containing; DGPF Protein; Histidine Kinase; DGPF Domain Family; DGPF Domain Protein; Dgpfaetke-Domain Containing Protein; Dgpfaetke Domain; Dgpf Family Protein; Transcription Regulation Protein; Dgpfaetke Domain-Containing Protein; Glutathione S-Transferase; Dgpf Domain-Containing Protein

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHFDGPNRTVTDGPFAEARELVA
GYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMEDFGDAVTPEIAAREERLRDQLANE

Sequences:

>Translated_143_residues
MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHFDGPNRTVTDGPFAEARELVA
GYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMEDFGDAVTPEIAAREERLRDQLANE
>Mature_143_residues
MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHFDGPNRTVTDGPFAEARELVA
GYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMEDFGDAVTPEIAAREERLRDQLANE

Specific function: Unknown

COG id: COG3795

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16064; Mature: 16064

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
7.0 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHF
CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEE
DGPNRTVTDGPFAEARELVAGYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMED
CCCCCCCCCCCHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCCCCCCCCCCEECCCCHHH
FGDAVTPEIAAREERLRDQLANE
CCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHF
CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEE
DGPNRTVTDGPFAEARELVAGYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMED
CCCCCCCCCCCHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCCCCCCCCCCEECCCCHHH
FGDAVTPEIAAREERLRDQLANE
CCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA