| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486947
Identifier: 103486947
GI number: 103486947
Start: 1517268
End: 1518308
Strand: Reverse
Name: 103486947
Synonym: Sala_1462
Alternate gene names: NA
Gene position: 1518308-1517268 (Counterclockwise)
Preceding gene: 103486948
Following gene: 103486946
Centisome position: 45.39
GC content: 69.26
Gene sequence:
>1041_bases ATGAACGCGCCCATCGGCAGGCTGGCCGACAGCCTGACCCTGCCGCAACCCTATCTGCTCTTCCTCGGCGATACGACCGA GGCGGGCTATGCCAAGACTGCCTTTGGCCTCGCCGACTGGGCGGCCGATCGCTGCGTCGGCGAACTCGGGGTCGCGGGCT GCACCGTCAGCGCGGGTCTGCCGCGGCTGTCGCCCGCCGAAGCGCGCGCGGCGGGCGCCCGCTCGCTGGTGATCGGCGTT GCCAACCAGGGCGGCGTGATTAGCGAGAGCTGGGTTGCGGCGCTGGTCGAGGCGATGGAGGCAGGGCTCGACATCATCAG CGGGCTGCACACGCGGCTGACCAGCGTTCCCGCGCTGGTGGAGGCGTCGCGGCACACCGGCCAGCGGCTTATCGACGTCC GCACCCCGCCGCCCTCGATCCCGATCGGCAACGGCCGCAAGCGCAGCGGCAAGAGACTGCTCACCGTCGGCACCGATTGC GCGCTCGGCAAGAAATATACCGCGCTTGCGTTGCACCGCGCCTTTGTCGCGCGCGGGATCGACGCCGATTTCCGCGCGAC GGGGCAGACGGGGATCATGATCGCGGGCGGCGGTATTCCCATGGACGCGGTCGTGTCGGACTTCGAGGCGGGCGCGGCGG AGATTTTGAGCCCCGATGCGCCCGACGATCATTGGGATCTGATCGAAGGGCAGGGGTCGATCTTCAACCCCGCCTATGCC GCGGTGTCGCTCGGCCTGCTCCACGGCAGCCAGCCCGACGTCTTCGTCGTTTGCCACGATCCCAGCCGCAGGGTCATCCT CGGCATGGAAAGCTTTGCGCTTCCCAGCATTGAGGAAGTGATCGACCTGACGATCCGGCTCGGCAGCCGGACCAATCCGG CGATCCGCTGCGGCGGGGTCAGCCTCAATACGTCGAGCATGGGGGTGGGCGAGGCCGAGGCGCTGATCGGCGCCGAAAGG CGCCGCCTCGGGCTGCCCGTCGCCGACCCGATCCGCGGCGGCGCCGCCTTCGACGCGCTCGTCGAAAATTGTCTCGCATG A
Upstream 100 bases:
>100_bases CAAACATCCCGTTCGGCGCTGCCGGAACCGGAGTTATCCGGCCACGGACGATCGGTGCTACCCTGACCGCCGGCTTTTGA GCGGATTGGAGTTGAACAGC
Downstream 100 bases:
>100_bases GCGTGGGCGAGACGGGCGGCAGGTCGAGCTGGTTCCAGCGCTTCCTGCTGCCCGGTTTCGCATTGAAGGCGGTCATCATT GGCGGCGGCTATGCCACGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MNAPIGRLADSLTLPQPYLLFLGDTTEAGYAKTAFGLADWAADRCVGELGVAGCTVSAGLPRLSPAEARAAGARSLVIGV ANQGGVISESWVAALVEAMEAGLDIISGLHTRLTSVPALVEASRHTGQRLIDVRTPPPSIPIGNGRKRSGKRLLTVGTDC ALGKKYTALALHRAFVARGIDADFRATGQTGIMIAGGGIPMDAVVSDFEAGAAEILSPDAPDDHWDLIEGQGSIFNPAYA AVSLGLLHGSQPDVFVVCHDPSRRVILGMESFALPSIEEVIDLTIRLGSRTNPAIRCGGVSLNTSSMGVGEAEALIGAER RRLGLPVADPIRGGAAFDALVENCLA
Sequences:
>Translated_346_residues MNAPIGRLADSLTLPQPYLLFLGDTTEAGYAKTAFGLADWAADRCVGELGVAGCTVSAGLPRLSPAEARAAGARSLVIGV ANQGGVISESWVAALVEAMEAGLDIISGLHTRLTSVPALVEASRHTGQRLIDVRTPPPSIPIGNGRKRSGKRLLTVGTDC ALGKKYTALALHRAFVARGIDADFRATGQTGIMIAGGGIPMDAVVSDFEAGAAEILSPDAPDDHWDLIEGQGSIFNPAYA AVSLGLLHGSQPDVFVVCHDPSRRVILGMESFALPSIEEVIDLTIRLGSRTNPAIRCGGVSLNTSSMGVGEAEALIGAER RRLGLPVADPIRGGAAFDALVENCLA >Mature_346_residues MNAPIGRLADSLTLPQPYLLFLGDTTEAGYAKTAFGLADWAADRCVGELGVAGCTVSAGLPRLSPAEARAAGARSLVIGV ANQGGVISESWVAALVEAMEAGLDIISGLHTRLTSVPALVEASRHTGQRLIDVRTPPPSIPIGNGRKRSGKRLLTVGTDC ALGKKYTALALHRAFVARGIDADFRATGQTGIMIAGGGIPMDAVVSDFEAGAAEILSPDAPDDHWDLIEGQGSIFNPAYA AVSLGLLHGSQPDVFVVCHDPSRRVILGMESFALPSIEEVIDLTIRLGSRTNPAIRCGGVSLNTSSMGVGEAEALIGAER RRLGLPVADPIRGGAAFDALVENCLA
Specific function: Unknown
COG id: COG3367
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35806; Mature: 35806
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPIGRLADSLTLPQPYLLFLGDTTEAGYAKTAFGLADWAADRCVGELGVAGCTVSAGL CCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCC PRLSPAEARAAGARSLVIGVANQGGVISESWVAALVEAMEAGLDIISGLHTRLTSVPALV CCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EASRHTGQRLIDVRTPPPSIPIGNGRKRSGKRLLTVGTDCALGKKYTALALHRAFVARGI HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC DADFRATGQTGIMIAGGGIPMDAVVSDFEAGAAEILSPDAPDDHWDLIEGQGSIFNPAYA CCCCEECCCCEEEEECCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCEECCCCCCCCHHHH AVSLGLLHGSQPDVFVVCHDPSRRVILGMESFALPSIEEVIDLTIRLGSRTNPAIRCGGV HHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHCCCCHHHHHHHHHEECCCCCCCEEECCE SLNTSSMGVGEAEALIGAERRRLGLPVADPIRGGAAFDALVENCLA EECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MNAPIGRLADSLTLPQPYLLFLGDTTEAGYAKTAFGLADWAADRCVGELGVAGCTVSAGL CCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCC PRLSPAEARAAGARSLVIGVANQGGVISESWVAALVEAMEAGLDIISGLHTRLTSVPALV CCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EASRHTGQRLIDVRTPPPSIPIGNGRKRSGKRLLTVGTDCALGKKYTALALHRAFVARGI HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC DADFRATGQTGIMIAGGGIPMDAVVSDFEAGAAEILSPDAPDDHWDLIEGQGSIFNPAYA CCCCEECCCCEEEEECCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCEECCCCCCCCHHHH AVSLGLLHGSQPDVFVVCHDPSRRVILGMESFALPSIEEVIDLTIRLGSRTNPAIRCGGV HHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHCCCCHHHHHHHHHEECCCCCCCEEECCE SLNTSSMGVGEAEALIGAERRRLGLPVADPIRGGAAFDALVENCLA EECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA