| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486946
Identifier: 103486946
GI number: 103486946
Start: 1516135
End: 1517271
Strand: Reverse
Name: 103486946
Synonym: Sala_1461
Alternate gene names: NA
Gene position: 1517271-1516135 (Counterclockwise)
Preceding gene: 103486947
Following gene: 103486945
Centisome position: 45.36
GC content: 66.31
Gene sequence:
>1137_bases ATGAGCGTGGGCGAGACGGGCGGCAGGTCGAGCTGGTTCCAGCGCTTCCTGCTGCCCGGTTTCGCATTGAAGGCGGTCAT CATTGGCGGCGGCTATGCCACGGGCCGCGAACTGGCGGAGTATTTCGTGCCATCGGGGCCATGGGGCGGACTCGCCGCGA TGCTGCTCGCAACCCTGATCTGGAGCGGCGTCGCCGCACTCACCTTCGCGCTCGCGCGGCGGATGCGCGCTTATGATTAT CGCCGCTTTTTCGAGGGGCTGCTCGGACCCGGCTGGATCGCGTTCAAAATCGCCTATCTGATCTTCGTCGTGCTGATCCT CGCCGTCTTTGGCGCGGCGGCGGGGGCGATCGGCGCCGCGACCTTCGGCTGGCCCGAGCTTGCAGGGTCGGTGCTGCTCG CGCTCGGCATCGTCGCCTTTACCGCCTTCGGCACCGCGATCGTCGAGACATTGTTCCAATATGCCTCGATGCTGATCTAT ACGGTCTATGCGCTGTTCATCGTCTTTGCGCTGGCGAGCTTTGGCGAGATGATCGGCAATGGCTTTGCGAACGCGCCGCC GCCGTCGGGCAATTGGGTGGCGGGCGGCATCACTTATGCGAGTTACAATATCGTCGGCGCGGTGATCATCCTGCCCGTGC TGCGCCATCTGACGAGCCAGCGCGACGCGGTGGTCGCGGGGCTGATCGCCGGGCCGCTCACGATGCTCCCCGCGATCCTC TTCTTCGCCGCGATGATGGCTTTTTATCCGGCGATCGGCGACGAGACGCTGCCGTCCGATTTCCTGCTGCGCCAGATGGC GGTGCCGGGCTTTCATATCCTGTTCCAGCTGATGATTTTCGCCGCGCTGCTCGAAAGCGGCGTCGGCGCGATCCATGCGA TCAACGAGCGCGTGTCGGGCGTCGTCGAGGCGCGTGGGCGCCCGCGGCTCGACACCGGCGCGCGCGCGGCGATCGGCTCG CTCATCCTTGTCGGCTGCATGTTCGTCGCGGCGCGCGTCGGCCTCGTCGACCTCATCGCCAGCGGCTATCGCTTCCTCGC CTGGCTTTTCCTCGCCGTTTTCGTGCTGCCGCTCATCACCATCGGCACCTGGCGGCTGCTGCGCCCCGCCGCTCCCCCCA TGGAGGCCCTGCCATGA
Upstream 100 bases:
>100_bases AGGCGCTGATCGGCGCCGAAAGGCGCCGCCTCGGGCTGCCCGTCGCCGACCCGATCCGCGGCGGCGCCGCCTTCGACGCG CTCGTCGAAAATTGTCTCGC
Downstream 100 bases:
>100_bases AACGCCTGCTCGTCCTCACGCTCTTCGTATCGCTCGCGATGCCCGCGTGGGCCGAACCGCCCGCCGACATCGCCGAAAGC GTCGAGGCGCTGCGGCAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 377
Protein sequence:
>378_residues MSVGETGGRSSWFQRFLLPGFALKAVIIGGGYATGRELAEYFVPSGPWGGLAAMLLATLIWSGVAALTFALARRMRAYDY RRFFEGLLGPGWIAFKIAYLIFVVLILAVFGAAAGAIGAATFGWPELAGSVLLALGIVAFTAFGTAIVETLFQYASMLIY TVYALFIVFALASFGEMIGNGFANAPPPSGNWVAGGITYASYNIVGAVIILPVLRHLTSQRDAVVAGLIAGPLTMLPAIL FFAAMMAFYPAIGDETLPSDFLLRQMAVPGFHILFQLMIFAALLESGVGAIHAINERVSGVVEARGRPRLDTGARAAIGS LILVGCMFVAARVGLVDLIASGYRFLAWLFLAVFVLPLITIGTWRLLRPAAPPMEALP
Sequences:
>Translated_378_residues MSVGETGGRSSWFQRFLLPGFALKAVIIGGGYATGRELAEYFVPSGPWGGLAAMLLATLIWSGVAALTFALARRMRAYDY RRFFEGLLGPGWIAFKIAYLIFVVLILAVFGAAAGAIGAATFGWPELAGSVLLALGIVAFTAFGTAIVETLFQYASMLIY TVYALFIVFALASFGEMIGNGFANAPPPSGNWVAGGITYASYNIVGAVIILPVLRHLTSQRDAVVAGLIAGPLTMLPAIL FFAAMMAFYPAIGDETLPSDFLLRQMAVPGFHILFQLMIFAALLESGVGAIHAINERVSGVVEARGRPRLDTGARAAIGS LILVGCMFVAARVGLVDLIASGYRFLAWLFLAVFVLPLITIGTWRLLRPAAPPMEALP >Mature_377_residues SVGETGGRSSWFQRFLLPGFALKAVIIGGGYATGRELAEYFVPSGPWGGLAAMLLATLIWSGVAALTFALARRMRAYDYR RFFEGLLGPGWIAFKIAYLIFVVLILAVFGAAAGAIGAATFGWPELAGSVLLALGIVAFTAFGTAIVETLFQYASMLIYT VYALFIVFALASFGEMIGNGFANAPPPSGNWVAGGITYASYNIVGAVIILPVLRHLTSQRDAVVAGLIAGPLTMLPAILF FAAMMAFYPAIGDETLPSDFLLRQMAVPGFHILFQLMIFAALLESGVGAIHAINERVSGVVEARGRPRLDTGARAAIGSL ILVGCMFVAARVGLVDLIASGYRFLAWLFLAVFVLPLITIGTWRLLRPAAPPMEALP
Specific function: Unknown
COG id: COG3949
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40140; Mature: 40009
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVGETGGRSSWFQRFLLPGFALKAVIIGGGYATGRELAEYFVPSGPWGGLAAMLLATLI CCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH WSGVAALTFALARRMRAYDYRRFFEGLLGPGWIAFKIAYLIFVVLILAVFGAAAGAIGAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFGWPELAGSVLLALGIVAFTAFGTAIVETLFQYASMLIYTVYALFIVFALASFGEMIGN HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GFANAPPPSGNWVAGGITYASYNIVGAVIILPVLRHLTSQRDAVVAGLIAGPLTMLPAIL CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FFAAMMAFYPAIGDETLPSDFLLRQMAVPGFHILFQLMIFAALLESGVGAIHAINERVSG HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH VVEARGRPRLDTGARAAIGSLILVGCMFVAARVGLVDLIASGYRFLAWLFLAVFVLPLIT HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGTWRLLRPAAPPMEALP HHHHHHHCCCCCCCCCCC >Mature Secondary Structure SVGETGGRSSWFQRFLLPGFALKAVIIGGGYATGRELAEYFVPSGPWGGLAAMLLATLI CCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH WSGVAALTFALARRMRAYDYRRFFEGLLGPGWIAFKIAYLIFVVLILAVFGAAAGAIGAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFGWPELAGSVLLALGIVAFTAFGTAIVETLFQYASMLIYTVYALFIVFALASFGEMIGN HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GFANAPPPSGNWVAGGITYASYNIVGAVIILPVLRHLTSQRDAVVAGLIAGPLTMLPAIL CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FFAAMMAFYPAIGDETLPSDFLLRQMAVPGFHILFQLMIFAALLESGVGAIHAINERVSG HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH VVEARGRPRLDTGARAAIGSLILVGCMFVAARVGLVDLIASGYRFLAWLFLAVFVLPLIT HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGTWRLLRPAAPPMEALP HHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA