| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486921
Identifier: 103486921
GI number: 103486921
Start: 1483112
End: 1484839
Strand: Direct
Name: 103486921
Synonym: Sala_1435
Alternate gene names: NA
Gene position: 1483112-1484839 (Clockwise)
Preceding gene: 103486919
Following gene: 103486922
Centisome position: 44.34
GC content: 63.02
Gene sequence:
>1728_bases ATGGGCGCCGGTTCGGGCATGTTCGGCTTCTGGGCATCGCAAACACAGTTCGTCTCTTGGCACTTTCGGGGGGGTTCGGC GATGCGCAGATTTATTCCAGCAGCCATGATCCTGCCGCTCGCGGCCTGTACCCATGTCGCGACCTTTCGCACGCAGGACA TCGCCCCGCCCGCCGAGGGCGAGGCGCTGAAGGGCGCATCCTATGCCCTTCCGATGGTCCAGTTCGATCTGGAGATCGCC CGATCGCTCTCCTCGTGCGACACCGCCGCCACGCCGCTGTTCGCGGTTCAGGCGACCGCAAAGGAATCCTATGTCGAAGG CGAAAGGTTCGAGATTGATCCCTCGGCGCTCAGTTCGCTTTTCAAGACATCCTCGCTCGCGATTGAAAAATATGAGGATC TCGACACGCTCAAATCCTTCAACGCCGGCGCCGACGACCGAACCGGCGATATTCTGGTGGCAGTCGCGCGGACCGGTATT GCGATTGCCGGGGCGACCGCTGGCATCCCCGTGCCGCTGGATGCGGTCGGCGAATCCTCGCCGTGGAAAAACGTGCTTGA ACGCGCACAGTCGATCCGCCTGTGGTGTTCGGCGGAGGCGCAGAAACGCCTGGCGACAGTCGAGATGGAGACCGGCAATC TGGAGCGATTGAACGCCCGGCTCGAAGCCGTGAACGCGCATGTCGTCCGGTTGAAAGAACTTGCGGCGTTTCGCCGGTTC GACAAGGCGATGATGGACAGTCTGTATCAGGAGGTTCAAAAACAGCAGCAACTCGCCACCGAGATCGCGACCACAAAGGC CGCGCTGGCCGATGCGACCGGTGCGCTGGGCGCAAAGACCGAGCTTCGCTGGCCCACTGCCTCGTCGGCGACGCCGCGCG CGGACGATCTCCGGCACCAGGTCCGCTTTTGGGATTCGGCGCGCAAGCTGCGAAAGTTCTGCTCCAATTTTCAGCTCGTC GCCTGGAACGGCGTCAGCGGCGTACCGCTCGATCCTGCGAGCCTCGTCGGCAACGAGACGGCGCTCGACGCCCACTGCGA GGGGGTGATTGCGGTGCTCCGGCAATCGATCGACGTCCGGTTGCGGTTCGAACCCGTCACCCAGACGCGCTGGGCCACCG GCGGCAATGTCGATTTGGCATATAAGCTGCCGTCCGATGCGCCCGCCAAAGGCCTTTTGGTTCGCGAGCCGATTCGCGCC AGCCTTGTCGCCGAATACCGCCTTTCGGGGACTGCGGACTGGAAAACCGCGTTGAAGGACGAGCCCTTGTGGGTGCCGCA ACTCGGCACGCTGCGCTTTTTGAAGTTTGCGAGCGGACCGTTCGAAAATGAACTGCTGTCGGTCGAATTGCGCAAGGACG GCCGGATCGAAAAGCAGCGATATGAAACCAAGGAAGCCGCGCTCGCCCGGCTGGGAGCGAGCGCCGTGGACATCGCCGAA CGTGTGCGCAGCGATGCCGAAAAGCGCGAAGAGCGGCGACGCGCGGACGAAAAATATCTTCGCGAAACCGCCGCGGCCGA ACGCGCCGAGGAGCTGGCGCGGCTACAGTATCAACTCGACATGCTGACCAGGAAAAAGGCCCTGATCGAAGCATCGCGCG ACGATTCGGCCGAACGGCTCGCGGCTGCCGAACTGGCGCAGATCAACGCGGACATTGCGATGCTGAAGGCGCAGATCGAC CGGATCAAGCTGACGAACGAACTCGGCCTGCTGCAACCGCCGGGATGA
Upstream 100 bases:
>100_bases CAACGCCCGCGTGGGGTCATCGTTCCGCCCGCGACGATCAAGCGGCGCCGCGTCGGGACAAGTCGCATTTCGTGCCAATG TGGCGACGATACGGGTTGCA
Downstream 100 bases:
>100_bases ACAGCGCCCCGGTCAGATGAGGCCTGCAAGCGGGCTCGACGGGTCGGCATAGCGGCGCTGCCCCATCCGGCCCGCCAGAT AGGCGTCGCGCCCCGCCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MGAGSGMFGFWASQTQFVSWHFRGGSAMRRFIPAAMILPLAACTHVATFRTQDIAPPAEGEALKGASYALPMVQFDLEIA RSLSSCDTAATPLFAVQATAKESYVEGERFEIDPSALSSLFKTSSLAIEKYEDLDTLKSFNAGADDRTGDILVAVARTGI AIAGATAGIPVPLDAVGESSPWKNVLERAQSIRLWCSAEAQKRLATVEMETGNLERLNARLEAVNAHVVRLKELAAFRRF DKAMMDSLYQEVQKQQQLATEIATTKAALADATGALGAKTELRWPTASSATPRADDLRHQVRFWDSARKLRKFCSNFQLV AWNGVSGVPLDPASLVGNETALDAHCEGVIAVLRQSIDVRLRFEPVTQTRWATGGNVDLAYKLPSDAPAKGLLVREPIRA SLVAEYRLSGTADWKTALKDEPLWVPQLGTLRFLKFASGPFENELLSVELRKDGRIEKQRYETKEAALARLGASAVDIAE RVRSDAEKREERRRADEKYLRETAAAERAEELARLQYQLDMLTRKKALIEASRDDSAERLAAAELAQINADIAMLKAQID RIKLTNELGLLQPPG
Sequences:
>Translated_575_residues MGAGSGMFGFWASQTQFVSWHFRGGSAMRRFIPAAMILPLAACTHVATFRTQDIAPPAEGEALKGASYALPMVQFDLEIA RSLSSCDTAATPLFAVQATAKESYVEGERFEIDPSALSSLFKTSSLAIEKYEDLDTLKSFNAGADDRTGDILVAVARTGI AIAGATAGIPVPLDAVGESSPWKNVLERAQSIRLWCSAEAQKRLATVEMETGNLERLNARLEAVNAHVVRLKELAAFRRF DKAMMDSLYQEVQKQQQLATEIATTKAALADATGALGAKTELRWPTASSATPRADDLRHQVRFWDSARKLRKFCSNFQLV AWNGVSGVPLDPASLVGNETALDAHCEGVIAVLRQSIDVRLRFEPVTQTRWATGGNVDLAYKLPSDAPAKGLLVREPIRA SLVAEYRLSGTADWKTALKDEPLWVPQLGTLRFLKFASGPFENELLSVELRKDGRIEKQRYETKEAALARLGASAVDIAE RVRSDAEKREERRRADEKYLRETAAAERAEELARLQYQLDMLTRKKALIEASRDDSAERLAAAELAQINADIAMLKAQID RIKLTNELGLLQPPG >Mature_574_residues GAGSGMFGFWASQTQFVSWHFRGGSAMRRFIPAAMILPLAACTHVATFRTQDIAPPAEGEALKGASYALPMVQFDLEIAR SLSSCDTAATPLFAVQATAKESYVEGERFEIDPSALSSLFKTSSLAIEKYEDLDTLKSFNAGADDRTGDILVAVARTGIA IAGATAGIPVPLDAVGESSPWKNVLERAQSIRLWCSAEAQKRLATVEMETGNLERLNARLEAVNAHVVRLKELAAFRRFD KAMMDSLYQEVQKQQQLATEIATTKAALADATGALGAKTELRWPTASSATPRADDLRHQVRFWDSARKLRKFCSNFQLVA WNGVSGVPLDPASLVGNETALDAHCEGVIAVLRQSIDVRLRFEPVTQTRWATGGNVDLAYKLPSDAPAKGLLVREPIRAS LVAEYRLSGTADWKTALKDEPLWVPQLGTLRFLKFASGPFENELLSVELRKDGRIEKQRYETKEAALARLGASAVDIAER VRSDAEKREERRRADEKYLRETAAAERAEELARLQYQLDMLTRKKALIEASRDDSAERLAAAELAQINADIAMLKAQIDR IKLTNELGLLQPPG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63105; Mature: 62974
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAGSGMFGFWASQTQFVSWHFRGGSAMRRFIPAAMILPLAACTHVATFRTQDIAPPAEG CCCCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC EALKGASYALPMVQFDLEIARSLSSCDTAATPLFAVQATAKESYVEGERFEIDPSALSSL CCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCEEEEEEHHHHHHCCCCCEEECHHHHHHH FKTSSLAIEKYEDLDTLKSFNAGADDRTGDILVAVARTGIAIAGATAGIPVPLDAVGESS HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCHHHCCCCC PWKNVLERAQSIRLWCSAEAQKRLATVEMETGNLERLNARLEAVNAHVVRLKELAAFRRF CHHHHHHHHHHEEEEECHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DKAMMDSLYQEVQKQQQLATEIATTKAALADATGALGAKTELRWPTASSATPRADDLRHQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHH VRFWDSARKLRKFCSNFQLVAWNGVSGVPLDPASLVGNETALDAHCEGVIAVLRQSIDVR HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCEE LRFEPVTQTRWATGGNVDLAYKLPSDAPAKGLLVREPIRASLVAEYRLSGTADWKTALKD EEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEECCCHHHHHHHHHHCCCCCCHHHHCCC EPLWVPQLGTLRFLKFASGPFENELLSVELRKDGRIEKQRYETKEAALARLGASAVDIAE CCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHH RVRSDAEKREERRRADEKYLRETAAAERAEELARLQYQLDMLTRKKALIEASRDDSAERL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH AAAELAQINADIAMLKAQIDRIKLTNELGLLQPPG HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCC >Mature Secondary Structure GAGSGMFGFWASQTQFVSWHFRGGSAMRRFIPAAMILPLAACTHVATFRTQDIAPPAEG CCCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC EALKGASYALPMVQFDLEIARSLSSCDTAATPLFAVQATAKESYVEGERFEIDPSALSSL CCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCEEEEEEHHHHHHCCCCCEEECHHHHHHH FKTSSLAIEKYEDLDTLKSFNAGADDRTGDILVAVARTGIAIAGATAGIPVPLDAVGESS HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCHHHCCCCC PWKNVLERAQSIRLWCSAEAQKRLATVEMETGNLERLNARLEAVNAHVVRLKELAAFRRF CHHHHHHHHHHEEEEECHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DKAMMDSLYQEVQKQQQLATEIATTKAALADATGALGAKTELRWPTASSATPRADDLRHQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHH VRFWDSARKLRKFCSNFQLVAWNGVSGVPLDPASLVGNETALDAHCEGVIAVLRQSIDVR HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCEE LRFEPVTQTRWATGGNVDLAYKLPSDAPAKGLLVREPIRASLVAEYRLSGTADWKTALKD EEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEECCCHHHHHHHHHHCCCCCCHHHHCCC EPLWVPQLGTLRFLKFASGPFENELLSVELRKDGRIEKQRYETKEAALARLGASAVDIAE CCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHH RVRSDAEKREERRRADEKYLRETAAAERAEELARLQYQLDMLTRKKALIEASRDDSAERL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH AAAELAQINADIAMLKAQIDRIKLTNELGLLQPPG HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA