Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486919

Identifier: 103486919

GI number: 103486919

Start: 1481943

End: 1482692

Strand: Direct

Name: 103486919

Synonym: Sala_1433

Alternate gene names: NA

Gene position: 1481943-1482692 (Clockwise)

Preceding gene: 103486918

Following gene: 103486921

Centisome position: 44.3

GC content: 68.4

Gene sequence:

>750_bases
ATGATGGTGCGCGGAAAATGGCTCTTCGCCGGGCTGCTGATGGCGGCGATGCCGCTTGGCGGTTGCCGGGACCAACCCGA
AGCCAGGTCCGACCTCGCCCCGCTCGATGATGAGCTGGCGAGCGGCGATCCCGCGATCAAGGCCGCGCTCGAAGACAAGA
TCATGGTTGATCCCAAGCTCGCGGGGCAATCGAACCGCAATGCGGCGGGCCCCGGCAATCGCCCTGTCGACGGCGGCGTT
CCCGGTCTTGCGGCGAGCAAGGCGGCGACCGCGGCCGAAGCCGCCGCGGCGCTCAGGGCTGGCAAGCTGCTCCCGGCGCC
CAGGGCGCTGCCACTCGAAGCAGGATGCGACGGCTGCGAGGCGCAGGCGCGCCCGGTCACCATCGGCGCGCTGGCACGCA
ACCAGCAGAAGGGACGTTGCGACGCGAAGCTGACTTATGGAAACGGCTGGGCAGACCGCCTGCCCGCCGCGTTCAAGGTC
TATCCGCGCGCGACGCTGCGCGAGGCGGCGGGCGTCGACGGCGGCAAATGCAATTTGCGGGTGGTCAACTTCCAGACCGC
CGCGTCGATGCAGGCGGTGCTCGATTATTATCACACGATGGCGATCCGCGCGGGCTACACCAGCGACCACCGCGTCAACG
GCAACGAGCATATGCTCGGCGGCACCAAGGGCGACCTTGCCTATGTGCTGATGCTGCGCCGCGACGGCGGCATGACCGAC
GTCGATCTGGTGGCATCGGGCGGCAAATAG

Upstream 100 bases:

>100_bases
CAGGTTTTGGCTAATAAAGCCTTACCCGTTAACGCATTTTCTTTGCCCCTTTTTAACCAGGATCGGGCAATCCGGGGGAA
AGATTAAGGGAGTGTTAGCG

Downstream 100 bases:

>100_bases
ACCTTTTCCCTTCCCGGTACGCAAAAAGAAAAGGCCCCGGAGATCGTTCCCCGGCGCCTTTTCCTTGCGGAGAAGCCTTC
GCGCGTCAGACCTTGTCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MMVRGKWLFAGLLMAAMPLGGCRDQPEARSDLAPLDDELASGDPAIKAALEDKIMVDPKLAGQSNRNAAGPGNRPVDGGV
PGLAASKAATAAEAAAALRAGKLLPAPRALPLEAGCDGCEAQARPVTIGALARNQQKGRCDAKLTYGNGWADRLPAAFKV
YPRATLREAAGVDGGKCNLRVVNFQTAASMQAVLDYYHTMAIRAGYTSDHRVNGNEHMLGGTKGDLAYVLMLRRDGGMTD
VDLVASGGK

Sequences:

>Translated_249_residues
MMVRGKWLFAGLLMAAMPLGGCRDQPEARSDLAPLDDELASGDPAIKAALEDKIMVDPKLAGQSNRNAAGPGNRPVDGGV
PGLAASKAATAAEAAAALRAGKLLPAPRALPLEAGCDGCEAQARPVTIGALARNQQKGRCDAKLTYGNGWADRLPAAFKV
YPRATLREAAGVDGGKCNLRVVNFQTAASMQAVLDYYHTMAIRAGYTSDHRVNGNEHMLGGTKGDLAYVLMLRRDGGMTD
VDLVASGGK
>Mature_249_residues
MMVRGKWLFAGLLMAAMPLGGCRDQPEARSDLAPLDDELASGDPAIKAALEDKIMVDPKLAGQSNRNAAGPGNRPVDGGV
PGLAASKAATAAEAAAALRAGKLLPAPRALPLEAGCDGCEAQARPVTIGALARNQQKGRCDAKLTYGNGWADRLPAAFKV
YPRATLREAAGVDGGKCNLRVVNFQTAASMQAVLDYYHTMAIRAGYTSDHRVNGNEHMLGGTKGDLAYVLMLRRDGGMTD
VDLVASGGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25929; Mature: 25929

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVRGKWLFAGLLMAAMPLGGCRDQPEARSDLAPLDDELASGDPAIKAALEDKIMVDPKL
CEECCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHCCCEEECCCC
AGQSNRNAAGPGNRPVDGGVPGLAASKAATAAEAAAALRAGKLLPAPRALPLEAGCDGCE
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCC
AQARPVTIGALARNQQKGRCDAKLTYGNGWADRLPAAFKVYPRATLREAAGVDGGKCNLR
CCCCCEEEEHHHCCCCCCCCCEEEEECCCHHHHCCCEEEECCCHHHHHHHCCCCCCEEEE
VVNFQTAASMQAVLDYYHTMAIRAGYTSDHRVNGNEHMLGGTKGDLAYVLMLRRDGGMTD
EEECHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEECCCCCCCEEEEEEEECCCCCCE
VDLVASGGK
EEEEECCCC
>Mature Secondary Structure
MMVRGKWLFAGLLMAAMPLGGCRDQPEARSDLAPLDDELASGDPAIKAALEDKIMVDPKL
CEECCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHCCCEEECCCC
AGQSNRNAAGPGNRPVDGGVPGLAASKAATAAEAAAALRAGKLLPAPRALPLEAGCDGCE
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCC
AQARPVTIGALARNQQKGRCDAKLTYGNGWADRLPAAFKVYPRATLREAAGVDGGKCNLR
CCCCCEEEEHHHCCCCCCCCCEEEEECCCHHHHCCCEEEECCCHHHHHHHCCCCCCEEEE
VVNFQTAASMQAVLDYYHTMAIRAGYTSDHRVNGNEHMLGGTKGDLAYVLMLRRDGGMTD
EEECHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEECCCCCCCEEEEEEEECCCCCCE
VDLVASGGK
EEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA