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The map label for this gene is rarD [C]

Identifier: 103486914

GI number: 103486914

Start: 1478702

End: 1479616

Strand: Reverse

Name: rarD [C]

Synonym: Sala_1428

Alternate gene names: 103486914

Gene position: 1479616-1478702 (Counterclockwise)

Preceding gene: 103486915

Following gene: 103486912

Centisome position: 44.23

GC content: 63.72

Gene sequence:

>915_bases
ATGGCACAGACAGCAGCCCCCGCGGGGAGCGACCAGGGCGGCCTGCCCTTCGCGATCGCCGCCTATGGCATCTGGGGCTT
CGTTCCGCTCTTCTTCAAACTCGTCGACAGCGTCCCGCCGGTCGAGGTGCTGACGCAGCGGATCATCTGGTCGCTGCCGC
TCTGTTTCCTCATCATGCTTTTTCGCCGCCAGATCGGCGAATATCTGGCGGCGCTGAGGGACTGGCGGACGCTGCGCCTG
TTGCTCGCGAGCGCGCTGCTGATTGCGGTCAACTGGCTTGTCTATATCTATGCGATCTTCACCGACCATGTGCTCGCGGC
GAGCCTTGGCTATTATCTCAATCCGCTCGTCAATGTGATGCTGGGGATGCTCTTCCTCGGCGAGCGGCTGTCGCGGATGC
AGTTGCTCGCGGTGGTCATTGCAGGCGTTGGCGTCGCAATCCTGCTCGCGGGGGCGCTCGATACGCTGTGGATCAGCCTG
ACGCTGGCCTTTTCCTTTGGCGTCTATGGCCTGCTGCGCAAGGTCGTGCCGGTGGGGTCGCTCCCCGGCCTGTCGGTCGA
GACGACGGTGCTGCTGCTGCCGTCGCTTGCGCTGTCGGCCTGGTATATCGGCGTCGGCGACGGGCGCGGCTTTGCGTCCG
ACACGTCGATCAGCCTGCTGCTGATGGCGGGCGGGGTGGTGACTGCGGTGCCGCTGCTGCTCTTTGCGACCGCGGCGCGG
CGGATGAGCTATGCCGCGCTTGGCTTTGTGCAATATCTGGCGCCGACGATCCAGTTCCTCTTGAGCCTGTTCGTGTTCGG
CGAGCCTTTGAAGCCCGTGCAACTTGCGTGTTTCGTGCTGATCTGGATCAGCATTGCGGTGTTCAGTTTCGACATGTGGC
GCAAGACGCGCGCCGAGCGGATTGTCGCCGTATGA

Upstream 100 bases:

>100_bases
TAGCGATGCTACCCGCCGCACCCGCCAAGGCCCGATATCTTCGCCATTTCGACGCCTCGAACGGGGAATTAATGGGTCCT
GACCCTAGAAGCCCGGCGCC

Downstream 100 bases:

>100_bases
CACGGTCGTCCGTCATCGCGGGGGGGATGATCAGACCAGCCGCCAGCCGATGGTTTCGCCCGCGTGGAAGGGCACGACGT
CGCCGATCCGGTCGGGGACG

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MAQTAAPAGSDQGGLPFAIAAYGIWGFVPLFFKLVDSVPPVEVLTQRIIWSLPLCFLIMLFRRQIGEYLAALRDWRTLRL
LLASALLIAVNWLVYIYAIFTDHVLAASLGYYLNPLVNVMLGMLFLGERLSRMQLLAVVIAGVGVAILLAGALDTLWISL
TLAFSFGVYGLLRKVVPVGSLPGLSVETTVLLLPSLALSAWYIGVGDGRGFASDTSISLLLMAGGVVTAVPLLLFATAAR
RMSYAALGFVQYLAPTIQFLLSLFVFGEPLKPVQLACFVLIWISIAVFSFDMWRKTRAERIVAV

Sequences:

>Translated_304_residues
MAQTAAPAGSDQGGLPFAIAAYGIWGFVPLFFKLVDSVPPVEVLTQRIIWSLPLCFLIMLFRRQIGEYLAALRDWRTLRL
LLASALLIAVNWLVYIYAIFTDHVLAASLGYYLNPLVNVMLGMLFLGERLSRMQLLAVVIAGVGVAILLAGALDTLWISL
TLAFSFGVYGLLRKVVPVGSLPGLSVETTVLLLPSLALSAWYIGVGDGRGFASDTSISLLLMAGGVVTAVPLLLFATAAR
RMSYAALGFVQYLAPTIQFLLSLFVFGEPLKPVQLACFVLIWISIAVFSFDMWRKTRAERIVAV
>Mature_303_residues
AQTAAPAGSDQGGLPFAIAAYGIWGFVPLFFKLVDSVPPVEVLTQRIIWSLPLCFLIMLFRRQIGEYLAALRDWRTLRLL
LASALLIAVNWLVYIYAIFTDHVLAASLGYYLNPLVNVMLGMLFLGERLSRMQLLAVVIAGVGVAILLAGALDTLWISLT
LAFSFGVYGLLRKVVPVGSLPGLSVETTVLLLPSLALSAWYIGVGDGRGFASDTSISLLLMAGGVVTAVPLLLFATAARR
MSYAALGFVQYLAPTIQFLLSLFVFGEPLKPVQLACFVLIWISIAVFSFDMWRKTRAERIVAV

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=297, Percent_Identity=41.4141414141414, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33064; Mature: 32933

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTAAPAGSDQGGLPFAIAAYGIWGFVPLFFKLVDSVPPVEVLTQRIIWSLPLCFLIML
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FRRQIGEYLAALRDWRTLRLLLASALLIAVNWLVYIYAIFTDHVLAASLGYYLNPLVNVM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGMLFLGERLSRMQLLAVVIAGVGVAILLAGALDTLWISLTLAFSFGVYGLLRKVVPVGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LPGLSVETTVLLLPSLALSAWYIGVGDGRGFASDTSISLLLMAGGVVTAVPLLLFATAAR
CCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
RMSYAALGFVQYLAPTIQFLLSLFVFGEPLKPVQLACFVLIWISIAVFSFDMWRKTRAER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVAV
HCCC
>Mature Secondary Structure 
AQTAAPAGSDQGGLPFAIAAYGIWGFVPLFFKLVDSVPPVEVLTQRIIWSLPLCFLIML
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH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HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]