| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is fabH
Identifier: 103486904
GI number: 103486904
Start: 1471564
End: 1472529
Strand: Reverse
Name: fabH
Synonym: Sala_1418
Alternate gene names: 103486904
Gene position: 1472529-1471564 (Counterclockwise)
Preceding gene: 103486905
Following gene: 103486903
Centisome position: 44.02
GC content: 69.57
Gene sequence:
>966_bases ATGACGCGCCGCGCGATCCTGAAAGGCACGGGCTCGGCGCTGCCGCGCACGCGCGTTTCCAACGCTGAGCTTGCGGAGCG CGTCGACACCAGCGACGAATGGATCGTCGAGCGCACCGGCATCCGTTTTCGCCACATCGCCGAACCCGACGAAACGACCG CGACGCTCGGCGCCGATGCCGCGCGGCGGGCGCTCGAGGCGGCGGGGCTCCAGCCCGCCGACATCGGCCTGATCATCGTC GCGACGGCGACCCCCGACAACACTTTCCCGGCGAGCGCGACCAAGGTGCAGGCGCTGCTCGGCGCGCCCGACTGCATCGC CTTTGACGTTGCGGCGGTCTGTTCGGGCTTCCTTTATGCCGTTTCGGTCGCCGACGCGATGCTGCGCACCGGCGCGGCGA GGCACGCGCTGGTGATCGGCAGCGAGACGTTCAGCCGCATCCTGGACTGGAACGACCGCACGACCTGCGTGTTGTTCGGC GATGGCGCGGGCGCGGTGGTGCTGTCGGCCGAAGACGTCGCCGACGATCGCGGCGTTCTGGCAACGCGGCTCCATGCCGA GGGCCGGTATTGCGATATGCTCTATGTCGATGGCGGCCCCTCGACGACGGGCACGGTCGGCCATGTGCGGATGCAGGGGC GCGAGGTTTTCCGTCATGCCGTCACCAACCTGGCCGCCGTGCTGGGCGAAGTGATGCGCGACGTCGGCCTCTCGGCCGAC GACATCGACTGGGTCGTGCCGCATCAGGCGAACAAGCGCATCATCGACGCGACCGCGAAAAAGCTGGGCCTGCCTGCCGA CCGCGTTGTCCTGACGGTGGACCAGCACGCCAACACGTCGGCCGCATCGGTGCCGCTGGCGCTCGACCTTGCCGTGCGCG ACGGGCGCATCAAGCGCGGCGATCTCGTGGTGCTCGAAGCAATGGGCGGCGGCTTCACCTGGGGCGCTGCCGTCCTGCGC GTGTAG
Upstream 100 bases:
>100_bases GAGTCGCGAACTGCGTCCACCTGTGCGCCGAGCTGATCGAAAAGGATATTACGCGTCAGGTGACCGAGGATCTTGCGAAT TTCCGCCGCGGCGACGCCGC
Downstream 100 bases:
>100_bases GGGCCAGTCGGCGTGGGCCGACGCGATGGCACTCGTCGCGTCAACTCCTCCGTCCATCCGTTTCAGTTTGGCGGATTTAT TCGGATTTGTTACATATAGG
Product: 3-oxoacyl-(acyl-carrier-protein) synthase III
Products: NA
Alternate protein names: 3-oxoacyl-[acyl-carrier-protein] synthase III; Beta-ketoacyl-ACP synthase III; KAS III
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MTRRAILKGTGSALPRTRVSNAELAERVDTSDEWIVERTGIRFRHIAEPDETTATLGADAARRALEAAGLQPADIGLIIV ATATPDNTFPASATKVQALLGAPDCIAFDVAAVCSGFLYAVSVADAMLRTGAARHALVIGSETFSRILDWNDRTTCVLFG DGAGAVVLSAEDVADDRGVLATRLHAEGRYCDMLYVDGGPSTTGTVGHVRMQGREVFRHAVTNLAAVLGEVMRDVGLSAD DIDWVVPHQANKRIIDATAKKLGLPADRVVLTVDQHANTSAASVPLALDLAVRDGRIKRGDLVVLEAMGGGFTWGAAVLR V
Sequences:
>Translated_321_residues MTRRAILKGTGSALPRTRVSNAELAERVDTSDEWIVERTGIRFRHIAEPDETTATLGADAARRALEAAGLQPADIGLIIV ATATPDNTFPASATKVQALLGAPDCIAFDVAAVCSGFLYAVSVADAMLRTGAARHALVIGSETFSRILDWNDRTTCVLFG DGAGAVVLSAEDVADDRGVLATRLHAEGRYCDMLYVDGGPSTTGTVGHVRMQGREVFRHAVTNLAAVLGEVMRDVGLSAD DIDWVVPHQANKRIIDATAKKLGLPADRVVLTVDQHANTSAASVPLALDLAVRDGRIKRGDLVVLEAMGGGFTWGAAVLR V >Mature_320_residues TRRAILKGTGSALPRTRVSNAELAERVDTSDEWIVERTGIRFRHIAEPDETTATLGADAARRALEAAGLQPADIGLIIVA TATPDNTFPASATKVQALLGAPDCIAFDVAAVCSGFLYAVSVADAMLRTGAARHALVIGSETFSRILDWNDRTTCVLFGD GAGAVVLSAEDVADDRGVLATRLHAEGRYCDMLYVDGGPSTTGTVGHVRMQGREVFRHAVTNLAAVLGEVMRDVGLSADD IDWVVPHQANKRIIDATAKKLGLPADRVVLTVDQHANTSAASVPLALDLAVRDGRIKRGDLVVLEAMGGGFTWGAAVLRV
Specific function: Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the
COG id: COG0332
COG function: function code I; 3-oxoacyl-[acyl-carrier-protein] synthase III
Gene ontology:
Cell location: Cytoplasm (Probable)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fabH family
Homologues:
Organism=Escherichia coli, GI1787333, Length=313, Percent_Identity=53.9936102236422, Blast_Score=333, Evalue=7e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FABH_SPHAL (Q1GT90)
Other databases:
- EMBL: CP000356 - RefSeq: YP_616465.1 - ProteinModelPortal: Q1GT90 - SMR: Q1GT90 - GeneID: 4081735 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_1418 - NMPDR: fig|317655.9.peg.1351 - HOGENOM: HBG649927 - OMA: NDYENTS - ProtClustDB: CLSK844009 - BioCyc: SALA317655:SALA_1418-MONOMER - BRENDA: 2.3.1.41 - GO: GO:0005737 - HAMAP: MF_01815 - InterPro: IPR013751 - InterPro: IPR013747 - InterPro: IPR004655 - InterPro: IPR016039 - InterPro: IPR016038 - Gene3D: G3DSA:3.40.47.10 - TIGRFAMs: TIGR00747
Pfam domain/function: PF08545 ACP_syn_III; PF08541 ACP_syn_III_C; SSF53901 Thiolase-like
EC number: =2.3.1.41
Molecular weight: Translated: 33876; Mature: 33745
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: ACT_SITE 114-114 ACT_SITE 248-248 ACT_SITE 278-278
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRAILKGTGSALPRTRVSNAELAERVDTSDEWIVERTGIRFRHIAEPDETTATLGADA CCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCEEEEECCCCCCHHHHCHHH ARRALEAAGLQPADIGLIIVATATPDNTFPASATKVQALLGAPDCIAFDVAAVCSGFLYA HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH VSVADAMLRTGAARHALVIGSETFSRILDWNDRTTCVLFGDGAGAVVLSAEDVADDRGVL HHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCEEEEEEECCCCEEEEEHHHCCCCCCEE ATRLHAEGRYCDMLYVDGGPSTTGTVGHVRMQGREVFRHAVTNLAAVLGEVMRDVGLSAD EEEEECCCCEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DIDWVVPHQANKRIIDATAKKLGLPADRVVLTVDQHANTSAASVPLALDLAVRDGRIKRG CCCEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEECC DLVVLEAMGGGFTWGAAVLRV CEEEEEECCCCEEHHHHEECC >Mature Secondary Structure TRRAILKGTGSALPRTRVSNAELAERVDTSDEWIVERTGIRFRHIAEPDETTATLGADA CCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCEEEEECCCCCCHHHHCHHH ARRALEAAGLQPADIGLIIVATATPDNTFPASATKVQALLGAPDCIAFDVAAVCSGFLYA HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH VSVADAMLRTGAARHALVIGSETFSRILDWNDRTTCVLFGDGAGAVVLSAEDVADDRGVL HHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCEEEEEEECCCCEEEEEHHHCCCCCCEE ATRLHAEGRYCDMLYVDGGPSTTGTVGHVRMQGREVFRHAVTNLAAVLGEVMRDVGLSAD EEEEECCCCEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DIDWVVPHQANKRIIDATAKKLGLPADRVVLTVDQHANTSAASVPLALDLAVRDGRIKRG CCCEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEECC DLVVLEAMGGGFTWGAAVLRV CEEEEEECCCCEEHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA