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The map label for this gene is ihfA

Identifier: 103486903

GI number: 103486903

Start: 1471095

End: 1471388

Strand: Reverse

Name: ihfA

Synonym: Sala_1417

Alternate gene names: 103486903

Gene position: 1471388-1471095 (Counterclockwise)

Preceding gene: 103486904

Following gene: 103486902

Centisome position: 43.99

GC content: 60.54

Gene sequence:

>294_bases
ATGTCCGCAGGAACGCTTACGCGCGCAGATATTGCGAGCCGGATCAATCAGCAGATCGGGCTGTCGCGCAATGAATCGGC
CGCCATCGTCGAATCGATTCTCGATCATATGTCCGATGCGCTTGCCGCTGGTCAGAATGTGAAGATTTCGGGTTTTGGCA
CCTTTGTCCTGCGCGACAAGGCGCAGCGAATCGGCCGCAATCCCAAAACGGGCGTGGAAGTGCCGATCCTGCCGCGGCGG
GTGATGACCTTTCGCGCCAGCCAGTCGATGCGCGCCCGCGTCGCGGGCAAATAG

Upstream 100 bases:

>100_bases
TTTATTCGGATTTGTTACATATAGGTTGCGAGACTCGCGATGGTGGGGGCTGTCCGGGGATTGATCGCATCAATCGCTTC
AGGAGGGGGAAGGGATCAAC

Downstream 100 bases:

>100_bases
GCCGGTATCGGCCCATGGCGGCATTTGACGGCTCGACCGATGACGGCAAGGCGCGCGGTGCCATGCTCGCCATCGGCGAA
CTGGCCGAACGCATCGGCGT

Product: integration host factor, alpha subunit

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MSAGTLTRADIASRINQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDKAQRIGRNPKTGVEVPILPRR
VMTFRASQSMRARVAGK

Sequences:

>Translated_97_residues
MSAGTLTRADIASRINQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDKAQRIGRNPKTGVEVPILPRR
VMTFRASQSMRARVAGK
>Mature_96_residues
SAGTLTRADIASRINQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDKAQRIGRNPKTGVEVPILPRRV
MTFRASQSMRARVAGK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=47.1910112359551, Blast_Score=94, Evalue=1e-21,
Organism=Escherichia coli, GI1787141, Length=89, Percent_Identity=34.8314606741573, Blast_Score=63, Evalue=4e-12,
Organism=Escherichia coli, GI1786644, Length=86, Percent_Identity=29.0697674418605, Blast_Score=59, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_SPHAL (Q1GT91)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_616464.1
- ProteinModelPortal:   Q1GT91
- SMR:   Q1GT91
- GeneID:   4081734
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_1417
- NMPDR:   fig|317655.9.peg.1350
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- BioCyc:   SALA317655:SALA_1417-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 10465; Mature: 10334

Theoretical pI: Translated: 12.11; Mature: 12.11

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGTLTRADIASRINQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDK
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHEEHHH
AQRIGRNPKTGVEVPILPRRVMTFRASQSMRARVAGK
HHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCC
>Mature Secondary Structure 
SAGTLTRADIASRINQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDK
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHEEHHH
AQRIGRNPKTGVEVPILPRRVMTFRASQSMRARVAGK
HHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA