| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is nuoN
Identifier: 103486782
GI number: 103486782
Start: 1354888
End: 1356318
Strand: Reverse
Name: nuoN
Synonym: Sala_1296
Alternate gene names: 103486782
Gene position: 1356318-1354888 (Counterclockwise)
Preceding gene: 103486783
Following gene: 103486781
Centisome position: 40.55
GC content: 64.08
Gene sequence:
>1431_bases ATGACCGCCGATCTCGCGCTCATCTGGCCCGAACTGATCCTGACGATCGGCGGGCTGATCACCCTGATGCTCGGCACCTT CATGGGCGACCGGCAGGTGGGCACCTACCAGCTCAGCGCGCTGCTCACGCTTGCCGCCGCAGCGGCCGCCGCTATCGCGC TGTTCGGCGTCGAGACGACGGTGTTTTCAGGCACGCTGTCGGTCGACGCCTTCGGTGGCTTCGCCAAGCTGCTGATCTAC GCCGCGAGCTTTATCTGCATTCTCGTCGCGCCGCGCTTCTTCACCGGCGGGATGCGCGCCGAATATCCGACGCTGATCCT GTTCGCGGCGCTCGGCATGGGCATCATGGCCTCGTCGCGCGACCTGATGACGCTTTACGTCGGGCTCGAACTCAACAGCC TCGCCGCCTATGTGCTCGCGAGCTTCATGCGGTCCGACGAACGGTCGAGCGAAGCGGGGCTCAAATATTTCGTGCTTGGC GCGCTCGCATCGGGGATGCTCCTCTACGGCATCTCGCTGCTCTATGGCTTCACCGGCACCACCGATTTCGCAGGCATTGC GGCGGCGATGGGCGGCGAGCCGGGCATCGGCCTGATCTTCGGCATCGTCTTCGTGCTTTCGGGGCTGGGCTTCAAGATCA GCGCCGTGCCGTTCCATATGTGGACCCCCGACGTCTATGAAGGCGCGCCGACGCCGGTGACGACCTTCTTTGCCAGCGCG CCCAAGGTGGCGGCGATGGCGCTGATGGCGCGCATCGTCATCGATGCGATGGGCCCCGCGGTCGGCGCCTGGCAACAGAT CGTCATCTTCCTCGCGCTCGCGTCGATCATCCTCGGCGCGGTTGGCGCGATCGGGCAGAAGAACATCAAACGCCTGCTCG CCTATTCGTCGATCAACAATGTCGGTTTCATGCTCATCGGCCTTGCCGCCGGAACGCAGCAGGGGGTTGAGGGCGTGCTG ACCTATCTGCTCGTCTATCTCGTGACGACGCTCGGCGCCTTCCTCGTCGTCCTGCAACTGCGCGATGAGGGCGGCAATCA GGTCGAAAGCATCCCCGCGCTCGCCGGCCTGTCGCAACGGCGACCGGGGCTGGCCGCCGCGATGTCGGTGTTCCTGTTCA GCCTTGCCGGCATTCCGCCGCTGTTCGGCTTCTGGCCCAAATATCTGGTGTTCGAGGCTGCGGTGAACGCGAACCTTGTG CCGCTGGCGGTTGCGGGCATCGTCGCATCGGTGATCGGCGCATTCTATTATATCGCGATCATCAAGACGATGTATTTCGA TGATAAATCTGACGTCGAGGTGACAGGCGGCGGCAATGCCGTCGAGGGCACGATCGTCGCGGCGAGCGCGCTTTGGCTGT TGGCGGTTGGTTATCTGTTCATCCCGGCGCTTGCGGTGGCTTCGGCGCACGCCGCATCGGTGCTGTTCTGA
Upstream 100 bases:
>100_bases CGAAGCCCGCGGGCGACGCGCATCTGGCCGTCGGCAAGCCGAAGCCCGCCGCAGTGCATGAGGAAGCCGCCCACGGATCG AGCCATGCGGGAGGCGTGCA
Downstream 100 bases:
>100_bases TCCCGCCGATCGAGCGTATCGCGCAGACAGGTTCGACCAATGCCGACCTGCTGGCGCGGCTGGCGGGCGGCGAGCATGTC GGCGAGGGTCACTGGCTGGT
Product: NADH dehydrogenase subunit N
Products: NA
Alternate protein names: NADH dehydrogenase I subunit N; NDH-1 subunit N
Number of amino acids: Translated: 476; Mature: 475
Protein sequence:
>476_residues MTADLALIWPELILTIGGLITLMLGTFMGDRQVGTYQLSALLTLAAAAAAAIALFGVETTVFSGTLSVDAFGGFAKLLIY AASFICILVAPRFFTGGMRAEYPTLILFAALGMGIMASSRDLMTLYVGLELNSLAAYVLASFMRSDERSSEAGLKYFVLG ALASGMLLYGISLLYGFTGTTDFAGIAAAMGGEPGIGLIFGIVFVLSGLGFKISAVPFHMWTPDVYEGAPTPVTTFFASA PKVAAMALMARIVIDAMGPAVGAWQQIVIFLALASIILGAVGAIGQKNIKRLLAYSSINNVGFMLIGLAAGTQQGVEGVL TYLLVYLVTTLGAFLVVLQLRDEGGNQVESIPALAGLSQRRPGLAAAMSVFLFSLAGIPPLFGFWPKYLVFEAAVNANLV PLAVAGIVASVIGAFYYIAIIKTMYFDDKSDVEVTGGGNAVEGTIVAASALWLLAVGYLFIPALAVASAHAASVLF
Sequences:
>Translated_476_residues MTADLALIWPELILTIGGLITLMLGTFMGDRQVGTYQLSALLTLAAAAAAAIALFGVETTVFSGTLSVDAFGGFAKLLIY AASFICILVAPRFFTGGMRAEYPTLILFAALGMGIMASSRDLMTLYVGLELNSLAAYVLASFMRSDERSSEAGLKYFVLG ALASGMLLYGISLLYGFTGTTDFAGIAAAMGGEPGIGLIFGIVFVLSGLGFKISAVPFHMWTPDVYEGAPTPVTTFFASA PKVAAMALMARIVIDAMGPAVGAWQQIVIFLALASIILGAVGAIGQKNIKRLLAYSSINNVGFMLIGLAAGTQQGVEGVL TYLLVYLVTTLGAFLVVLQLRDEGGNQVESIPALAGLSQRRPGLAAAMSVFLFSLAGIPPLFGFWPKYLVFEAAVNANLV PLAVAGIVASVIGAFYYIAIIKTMYFDDKSDVEVTGGGNAVEGTIVAASALWLLAVGYLFIPALAVASAHAASVLF >Mature_475_residues TADLALIWPELILTIGGLITLMLGTFMGDRQVGTYQLSALLTLAAAAAAAIALFGVETTVFSGTLSVDAFGGFAKLLIYA ASFICILVAPRFFTGGMRAEYPTLILFAALGMGIMASSRDLMTLYVGLELNSLAAYVLASFMRSDERSSEAGLKYFVLGA LASGMLLYGISLLYGFTGTTDFAGIAAAMGGEPGIGLIFGIVFVLSGLGFKISAVPFHMWTPDVYEGAPTPVTTFFASAP KVAAMALMARIVIDAMGPAVGAWQQIVIFLALASIILGAVGAIGQKNIKRLLAYSSINNVGFMLIGLAAGTQQGVEGVLT YLLVYLVTTLGAFLVVLQLRDEGGNQVESIPALAGLSQRRPGLAAAMSVFLFSLAGIPPLFGFWPKYLVFEAAVNANLVP LAVAGIVASVIGAFYYIAIIKTMYFDDKSDVEVTGGGNAVEGTIVAASALWLLAVGYLFIPALAVASAHAASVLF
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG1007
COG function: function code C; NADH:ubiquinone oxidoreductase subunit 2 (chain N)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the complex I subunit 2 family
Homologues:
Organism=Homo sapiens, GI251831108, Length=304, Percent_Identity=25, Blast_Score=75, Evalue=1e-13, Organism=Escherichia coli, GI145693160, Length=409, Percent_Identity=37.8973105134474, Blast_Score=213, Evalue=3e-56, Organism=Escherichia coli, GI1788829, Length=306, Percent_Identity=26.797385620915, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1788827, Length=305, Percent_Identity=26.2295081967213, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1788831, Length=305, Percent_Identity=25.2459016393443, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788614, Length=366, Percent_Identity=25.6830601092896, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788613, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI2367154, Length=268, Percent_Identity=26.4925373134328, Blast_Score=66, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NUON_SPHAL (Q1GTL2)
Other databases:
- EMBL: CP000356 - RefSeq: YP_616343.1 - GeneID: 4082588 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_1296 - NMPDR: fig|317655.9.peg.1232 - HOGENOM: HBG747830 - OMA: MDMNTLL - ProtClustDB: PRK05777 - BioCyc: SALA317655:SALA_1296-MONOMER - GO: GO:0006810 - HAMAP: MF_00445 - InterPro: IPR010096 - InterPro: IPR001750 - TIGRFAMs: TIGR01770
Pfam domain/function: PF00361 Oxidored_q1
EC number: =1.6.99.5
Molecular weight: Translated: 49544; Mature: 49413
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x10e77050)-; HASH(0x125e962c)-; HASH(0x125d2694)-; HASH(0x125ecce0)-; HASH(0x12130ce8)-; HASH(0xfe1be84)-; HASH(0x125d27f0)-; HASH(0x121fc1b0)-; HASH(0x125d2634)-; HASH(0x125e959c)-; HASH(0x11d02018)-; HASH(0x125d28ec)-; HASH(0x1221f57c)-; HASH(0x12200818)-;
Cys/Met content:
0.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTADLALIWPELILTIGGLITLMLGTFMGDRQVGTYQLSALLTLAAAAAAAIALFGVETT CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VFSGTLSVDAFGGFAKLLIYAASFICILVAPRFFTGGMRAEYPTLILFAALGMGIMASSR HEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC DLMTLYVGLELNSLAAYVLASFMRSDERSSEAGLKYFVLGALASGMLLYGISLLYGFTGT CEEEEEECCCHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC TDFAGIAAAMGGEPGIGLIFGIVFVLSGLGFKISAVPFHMWTPDVYEGAPTPVTTFFASA CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCHHHHHHCC PKVAAMALMARIVIDAMGPAVGAWQQIVIFLALASIILGAVGAIGQKNIKRLLAYSSINN HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC VGFMLIGLAAGTQQGVEGVLTYLLVYLVTTLGAFLVVLQLRDEGGNQVESIPALAGLSQR CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC RPGLAAAMSVFLFSLAGIPPLFGFWPKYLVFEAAVNANLVPLAVAGIVASVIGAFYYIAI CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH IKTMYFDDKSDVEVTGGGNAVEGTIVAASALWLLAVGYLFIPALAVASAHAASVLF HHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH >Mature Secondary Structure TADLALIWPELILTIGGLITLMLGTFMGDRQVGTYQLSALLTLAAAAAAAIALFGVETT CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VFSGTLSVDAFGGFAKLLIYAASFICILVAPRFFTGGMRAEYPTLILFAALGMGIMASSR HEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC DLMTLYVGLELNSLAAYVLASFMRSDERSSEAGLKYFVLGALASGMLLYGISLLYGFTGT CEEEEEECCCHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC TDFAGIAAAMGGEPGIGLIFGIVFVLSGLGFKISAVPFHMWTPDVYEGAPTPVTTFFASA CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCHHHHHHCC PKVAAMALMARIVIDAMGPAVGAWQQIVIFLALASIILGAVGAIGQKNIKRLLAYSSINN HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC VGFMLIGLAAGTQQGVEGVLTYLLVYLVTTLGAFLVVLQLRDEGGNQVESIPALAGLSQR CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC RPGLAAAMSVFLFSLAGIPPLFGFWPKYLVFEAAVNANLVPLAVAGIVASVIGAFYYIAI CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH IKTMYFDDKSDVEVTGGGNAVEGTIVAASALWLLAVGYLFIPALAVASAHAASVLF HHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA