| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486777
Identifier: 103486777
GI number: 103486777
Start: 1348822
End: 1351185
Strand: Direct
Name: 103486777
Synonym: Sala_1291
Alternate gene names: NA
Gene position: 1348822-1351185 (Clockwise)
Preceding gene: 103486774
Following gene: 103486798
Centisome position: 40.32
GC content: 68.02
Gene sequence:
>2364_bases ATGACGGGGGAAAAGAAAATCGTCGGATTGTGGCGGGAATCCGCGGCAGGTCCGGAAGCAGACAGCGCCGCGCCGGTCGA GGCCGCCGCGGCCGCTGCCGTATCCGCACCGGACGCGGAGGGCGCGGCGGGCGATCGCGACTGGCTGGACATGACGCCGC TCGACGACGACGCCGAAGCCCGCATCGAGGGCGAAGCCGCGTCGGCATGGCGCGAGCGCGGCATACCGGCGCTCCTGATC CTTCTTGCAGTGGGATGGACGGGATTCGCGCTCGGCGTCGCCACTGACGGCTTCGCACAAAGCCCGGCGATCGCCGACTG GCCCGCGCATATTGCGACGATCGCGATGCCGCTTGCGCTGCTCGCGCTGCTCTGGATGCTCTGGCTGCGCTCGGGTCGGT CGGAACAGGCGCGGTTCGCGCGCATCGCCGCGGCGCTGCGTGCCGAAAATCTGGCGCTGAATCAGTCGATGCACTCGCTC GGCCTGCACCTCGCCGACGCGCAGAAGCAGCTTGGTGAACAGGCGCGGATCGTCCAGCAACTCGGCCTCGACACGGTGAT GCGCCTTGCTGAAAGCAGCGACAAGCTCGCGAGCAACGCCGCGGTGATCGCCAATGCCCACGACCAGCTCGCTCGCTCGG GCGATGTCGCGTTGCAACGGATGGACGGTCTGCTTGCCGGGCTGCCGCGGATCGACGATGTGGCGCAGCGGCTGGCGGTC AATTTCCGCGAGGCGGGATTGGTGGCGCACCAGCAGGGCGCGAACCTCGAAGCCAGGCTCGCCGCGCTGGGCGAAGAGGC GGCGCGGACGGCGCAGGCCGGTCAGGCTTCGACCGAAGCGATTCTCGAAGCGATTGTGGCGCTTCAGGAACAGACAAAGG AAACCGAAAGCGGCCTGCTCGCCGCCTCGGCGGAGGTTAGCGGCGCGCATGACGCCGCACTGGCGCGCGTGACCGAGAGC GCGGCGTCGGTGCGCCGCGCGATGGCCGACACGCTCGCTGCGCTCTCCGCGCAAAGCGAGGAGATCTGGCGCCAGTTTGG CGAGAGCGTCGACGCCGCGGCCGCGCAGATGGACGCCAGGCTCGCGGCGGCGCGCGAGGCCGGCGACGCGATCGGGGCAC AATTGTCGGAGCATGCCGATGCGAGCGACGCCCTCGCGGGGCGGATCGCCGCGCATGTCGCCGAGGTCGGCAAACAGCTG GAGACGCTCAACGTCAACGTCGACGCCAGCACCGGCGTCGTCGGTCGCGCGATCGACGATACCAAAGCGCAGCTTGCGGC CTTCATGGAGCAGGTGCAGAGCGGAAATGTTTCGGCGGCTCAACTCGTTTCGCACGCCGAATCGTTGTTGCTCGCGCTCG ATGCGGTAACGCGGGAGCTTGACGAAACGCTGCCGCGCGCGCTCGACCGCATCGCCGGACACGGCAAGACGACACAATCC GCCCTCGCCGAAATCCGTCCGCTGCTCGAAGCGTCCGAACTCGTCGCGCAATCGACGGTCTCGCACGTCCATGCCGTGCA GGCGACGCTCCGGTCGAACGAGGAACAGATGACGGGTCAAGCGGCGAACCAGCAGGCGCTGGCCGACCGACTGAACGCCT CGTTCGCCGAAGCCGAAGCATCGCTCGCGAAACTGCGCGACGGCGCCGAAGCCTTCAGCGAACAGGGCGGCGCGCGGATG ATCGCGACGCTGGCCGAGGTTCGGGCAACCGCCGATTCGGCGGCCAACCAGGCGCGGCTGACGCTCGAACGGCTTGTCGA TGGCGCGCGCGAGACGATGAAGGCAACCGCGAGCGAGGCGATCGACGCCGCCTTCCGGACCGAAATCATGGCGCAGCTCG CCGCAATCGAGGATGCGTCGGCGCGCGCCGTCGCCGCGGCGAACAGCGCCGCCGACCGGCTGATGCGCCAGCTCGTCACG ATCATGGACGCCAGCGAGAGTGTCGAACAGCGCGTGAGCGAGGCCGAACAGGCGATCGCCGCTTCCGACCGCGACACGCT CGCCAAACAGGTCGGCGTGCTCACCGAAGCGCTCAAATCGACCGCGATCGACGTCACCAAGATATTGTCGAGCGAGGTCA GCGACACCGCGTGGGACGCTTACCTCAAGGGCGACCGCGGCGTCTTTGCCCGCCGCGCGGTCAAGCTGGTCGAGAACAGC GAGGTAAAGGAAATCCTGCGCCTCTATCAGAATGACGACGGCTTCCACGCCGCGGTCAATCAGTTCATCCATGATTTCGA GGCGATGCTGCGCCTGCTGATCGGCGCACGCGACGGATCGGCGATCAGCGTGACCCTGCTGTCCTCCGATATCGGCAAGC TGTATGTGGCGCTGGCGCAGGCGATCGACCGGCTGCGGAGTTAA
Upstream 100 bases:
>100_bases ACCGGTCGAGGGGGCCGCTGTCGAACGACATTCCACAGCTTTGCCATCGGCGGGGTTAAGTTTCCGTTTCATGGCGGGCG TTTGATGCTAAGATGGCGCG
Downstream 100 bases:
>100_bases AGCAGGGCCTGCTTGGTCACGACGGGCCGTCCGCCGGATGGCGGGCCGGATGGCGGGGCGCCGAGGCTTTTCGCCCCTTT GCCCAGGAATTGATAATCAG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; ATPase; Kinesin-Like Protein
Number of amino acids: Translated: 787; Mature: 786
Protein sequence:
>787_residues MTGEKKIVGLWRESAAGPEADSAAPVEAAAAAAVSAPDAEGAAGDRDWLDMTPLDDDAEARIEGEAASAWRERGIPALLI LLAVGWTGFALGVATDGFAQSPAIADWPAHIATIAMPLALLALLWMLWLRSGRSEQARFARIAAALRAENLALNQSMHSL GLHLADAQKQLGEQARIVQQLGLDTVMRLAESSDKLASNAAVIANAHDQLARSGDVALQRMDGLLAGLPRIDDVAQRLAV NFREAGLVAHQQGANLEARLAALGEEAARTAQAGQASTEAILEAIVALQEQTKETESGLLAASAEVSGAHDAALARVTES AASVRRAMADTLAALSAQSEEIWRQFGESVDAAAAQMDARLAAAREAGDAIGAQLSEHADASDALAGRIAAHVAEVGKQL ETLNVNVDASTGVVGRAIDDTKAQLAAFMEQVQSGNVSAAQLVSHAESLLLALDAVTRELDETLPRALDRIAGHGKTTQS ALAEIRPLLEASELVAQSTVSHVHAVQATLRSNEEQMTGQAANQQALADRLNASFAEAEASLAKLRDGAEAFSEQGGARM IATLAEVRATADSAANQARLTLERLVDGARETMKATASEAIDAAFRTEIMAQLAAIEDASARAVAAANSAADRLMRQLVT IMDASESVEQRVSEAEQAIAASDRDTLAKQVGVLTEALKSTAIDVTKILSSEVSDTAWDAYLKGDRGVFARRAVKLVENS EVKEILRLYQNDDGFHAAVNQFIHDFEAMLRLLIGARDGSAISVTLLSSDIGKLYVALAQAIDRLRS
Sequences:
>Translated_787_residues MTGEKKIVGLWRESAAGPEADSAAPVEAAAAAAVSAPDAEGAAGDRDWLDMTPLDDDAEARIEGEAASAWRERGIPALLI LLAVGWTGFALGVATDGFAQSPAIADWPAHIATIAMPLALLALLWMLWLRSGRSEQARFARIAAALRAENLALNQSMHSL GLHLADAQKQLGEQARIVQQLGLDTVMRLAESSDKLASNAAVIANAHDQLARSGDVALQRMDGLLAGLPRIDDVAQRLAV NFREAGLVAHQQGANLEARLAALGEEAARTAQAGQASTEAILEAIVALQEQTKETESGLLAASAEVSGAHDAALARVTES AASVRRAMADTLAALSAQSEEIWRQFGESVDAAAAQMDARLAAAREAGDAIGAQLSEHADASDALAGRIAAHVAEVGKQL ETLNVNVDASTGVVGRAIDDTKAQLAAFMEQVQSGNVSAAQLVSHAESLLLALDAVTRELDETLPRALDRIAGHGKTTQS ALAEIRPLLEASELVAQSTVSHVHAVQATLRSNEEQMTGQAANQQALADRLNASFAEAEASLAKLRDGAEAFSEQGGARM IATLAEVRATADSAANQARLTLERLVDGARETMKATASEAIDAAFRTEIMAQLAAIEDASARAVAAANSAADRLMRQLVT IMDASESVEQRVSEAEQAIAASDRDTLAKQVGVLTEALKSTAIDVTKILSSEVSDTAWDAYLKGDRGVFARRAVKLVENS EVKEILRLYQNDDGFHAAVNQFIHDFEAMLRLLIGARDGSAISVTLLSSDIGKLYVALAQAIDRLRS >Mature_786_residues TGEKKIVGLWRESAAGPEADSAAPVEAAAAAAVSAPDAEGAAGDRDWLDMTPLDDDAEARIEGEAASAWRERGIPALLIL LAVGWTGFALGVATDGFAQSPAIADWPAHIATIAMPLALLALLWMLWLRSGRSEQARFARIAAALRAENLALNQSMHSLG LHLADAQKQLGEQARIVQQLGLDTVMRLAESSDKLASNAAVIANAHDQLARSGDVALQRMDGLLAGLPRIDDVAQRLAVN FREAGLVAHQQGANLEARLAALGEEAARTAQAGQASTEAILEAIVALQEQTKETESGLLAASAEVSGAHDAALARVTESA ASVRRAMADTLAALSAQSEEIWRQFGESVDAAAAQMDARLAAAREAGDAIGAQLSEHADASDALAGRIAAHVAEVGKQLE TLNVNVDASTGVVGRAIDDTKAQLAAFMEQVQSGNVSAAQLVSHAESLLLALDAVTRELDETLPRALDRIAGHGKTTQSA LAEIRPLLEASELVAQSTVSHVHAVQATLRSNEEQMTGQAANQQALADRLNASFAEAEASLAKLRDGAEAFSEQGGARMI ATLAEVRATADSAANQARLTLERLVDGARETMKATASEAIDAAFRTEIMAQLAAIEDASARAVAAANSAADRLMRQLVTI MDASESVEQRVSEAEQAIAASDRDTLAKQVGVLTEALKSTAIDVTKILSSEVSDTAWDAYLKGDRGVFARRAVKLVENSE VKEILRLYQNDDGFHAAVNQFIHDFEAMLRLLIGARDGSAISVTLLSSDIGKLYVALAQAIDRLRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82651; Mature: 82520
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGEKKIVGLWRESAAGPEADSAAPVEAAAAAAVSAPDAEGAAGDRDWLDMTPLDDDAEA CCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH RIEGEAASAWRERGIPALLILLAVGWTGFALGVATDGFAQSPAIADWPAHIATIAMPLAL HCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH LALLWMLWLRSGRSEQARFARIAAALRAENLALNQSMHSLGLHLADAQKQLGEQARIVQQ HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGLDTVMRLAESSDKLASNAAVIANAHDQLARSGDVALQRMDGLLAGLPRIDDVAQRLAV HCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH NFREAGLVAHQQGANLEARLAALGEEAARTAQAGQASTEAILEAIVALQEQTKETESGLL HHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCE AASAEVSGAHDAALARVTESAASVRRAMADTLAALSAQSEEIWRQFGESVDAAAAQMDAR EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHH LAAAREAGDAIGAQLSEHADASDALAGRIAAHVAEVGKQLETLNVNVDASTGVVGRAIDD HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHH TKAQLAAFMEQVQSGNVSAAQLVSHAESLLLALDAVTRELDETLPRALDRIAGHGKTTQS HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH ALAEIRPLLEASELVAQSTVSHVHAVQATLRSNEEQMTGQAANQQALADRLNASFAEAEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH SLAKLRDGAEAFSEQGGARMIATLAEVRATADSAANQARLTLERLVDGARETMKATASEA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDAAFRTEIMAQLAAIEDASARAVAAANSAADRLMRQLVTIMDASESVEQRVSEAEQAIA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ASDRDTLAKQVGVLTEALKSTAIDVTKILSSEVSDTAWDAYLKGDRGVFARRAVKLVENS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH EVKEILRLYQNDDGFHAAVNQFIHDFEAMLRLLIGARDGSAISVTLLSSDIGKLYVALAQ HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHH AIDRLRS HHHHHCC >Mature Secondary Structure TGEKKIVGLWRESAAGPEADSAAPVEAAAAAAVSAPDAEGAAGDRDWLDMTPLDDDAEA CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH RIEGEAASAWRERGIPALLILLAVGWTGFALGVATDGFAQSPAIADWPAHIATIAMPLAL HCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH LALLWMLWLRSGRSEQARFARIAAALRAENLALNQSMHSLGLHLADAQKQLGEQARIVQQ HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGLDTVMRLAESSDKLASNAAVIANAHDQLARSGDVALQRMDGLLAGLPRIDDVAQRLAV HCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH NFREAGLVAHQQGANLEARLAALGEEAARTAQAGQASTEAILEAIVALQEQTKETESGLL HHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCE AASAEVSGAHDAALARVTESAASVRRAMADTLAALSAQSEEIWRQFGESVDAAAAQMDAR EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHH LAAAREAGDAIGAQLSEHADASDALAGRIAAHVAEVGKQLETLNVNVDASTGVVGRAIDD HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHH TKAQLAAFMEQVQSGNVSAAQLVSHAESLLLALDAVTRELDETLPRALDRIAGHGKTTQS HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH ALAEIRPLLEASELVAQSTVSHVHAVQATLRSNEEQMTGQAANQQALADRLNASFAEAEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH SLAKLRDGAEAFSEQGGARMIATLAEVRATADSAANQARLTLERLVDGARETMKATASEA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDAAFRTEIMAQLAAIEDASARAVAAANSAADRLMRQLVTIMDASESVEQRVSEAEQAIA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ASDRDTLAKQVGVLTEALKSTAIDVTKILSSEVSDTAWDAYLKGDRGVFARRAVKLVENS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH EVKEILRLYQNDDGFHAAVNQFIHDFEAMLRLLIGARDGSAISVTLLSSDIGKLYVALAQ HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHH AIDRLRS HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA