Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486775

Identifier: 103486775

GI number: 103486775

Start: 1347013

End: 1348293

Strand: Reverse

Name: 103486775

Synonym: Sala_1289

Alternate gene names: NA

Gene position: 1348293-1347013 (Counterclockwise)

Preceding gene: 103486776

Following gene: 103486773

Centisome position: 40.31

GC content: 64.95

Gene sequence:

>1281_bases
ATGTTCAAGCGTTTCCGCTCGATGCCCGCAACGGCGATGGCCGCCGTGCTGGGCTGCGCGCTGATGACAACCGCGACCCC
CGCCGCGGCGCAGAAGAAGCCCAAGAAGGAAGAGGCCGCCAAGGGCAAGTCGCTCAGCCCCAGCAAGGGTTTCGCCCCGG
CGCTCAAAAAGATGACCGACGCGACCGCGGCCAAGGATGCCGCAGCGTTGCAGGCGGCCATGGCTGAGGGGCAGGCGAGC
GCGACCTCGCCCGACGACCAATATCTCCTCTCCTTCTATCAGTTGCAGCTCGGCATCCTGAACAAGGACACGGCGCTGCA
GGGCCAGGGGCTCGACGGGATGATTGATTCGGGGCTGACCCCACCGGAAAATCTCGCGACCTATAACTTTTATTCGGGCA
ATTTCGCTTATGGCGCCAAAAATTACGCCAAGGCGATCCAGCGCCTCGAAGCTGCCAAGGCTGCGGGTTCGACCGAGCCG
GCCCTGGCGGCGATCCTGATGGACAGCTATCTGAACGCGGGGCAGATCGACCAGGGCTGGGCGATCGCCAAGGCCGGCAT
CGATGCGGCGCGTGCCGCCGGAACGAAGCCGTCAGAGGATCTTTATGTCCGTCCGGCGCAGGCTTTCCAGAAAGCCAACC
GAACCAACGAGATGCTCGACGTTCTGACGATGCGTGTCGAAGATTATCCCTCGCCCGCGACATGGCGCAATACGCTCTAT
ATCCTGTTGCAGCAGTCGGGTGGCGACAAGGAGCTCAACCTCGACATCCTGCGCCTGATGCGCGCGACCAATGCGATGAC
TCAGCGCCCGGAGTATCTGGAATACTCGGCCCTTGCGGTCGAGGCAGGCTATCCGGGTGAAGCCATCGCCGTGATCCGTC
AGGGGCAGAATAACGGGGTGATTCCAAAGGGTGACACCCATTTCGGCAACATTCTCGAAACACAGACGCCTCGCGCGGCC
GCCGACGCCGCCGCGGTCGCCGCCGACGCGAACAAGGCCGCGACGCTGAACAATCCCAAGGCCGCGCGGTCGACCGCCGA
TGTGCTGGTCGGAATCGGCCAGCCCGCGAAAGCGATCCCGCTTTATGAAGCCGCGCTGAAGGCGGCGCCGAACGACGCGA
TCGCGCAGTTCCGCCTGGGCGTGGCGCAGGCGCTCGCCGGACAGGTCGATGCCGCCGCGGCGAGTTTTGCCAAGATCCAG
GGCAATCGGGCGCGATTGGCGCAGCTGTGGGCGGTGCGCGCCAAAACCGGTGCCGCACCCGCGCCGGCCACCGCCAGCTG
A

Upstream 100 bases:

>100_bases
GTCTTGCCATGGCAACGCGACCGGTTTAGCCGCGTTAACGACACGCGGCCGAATGCGCCTGCGCGGCGGACGGTCCACGA
GTTTCAGAGGAGAGAGTTCG

Downstream 100 bases:

>100_bases
CCGAAGCGCATATTCCGGAAAAAAGGGCGCCGTTCCAGGAACGGCGCCCTTTTCGATGACCTGGCGAATCAGATTTCGAC
CGGAACGCCCGCCAGCTGTT

Product: tetratricopeptide TPR_2

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTDATAAKDAAALQAAMAEGQAS
ATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLTPPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEP
ALAAILMDSYLNAGQIDQGWAIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY
ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGVIPKGDTHFGNILETQTPRAA
ADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIPLYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQ
GNRARLAQLWAVRAKTGAAPAPATAS

Sequences:

>Translated_426_residues
MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTDATAAKDAAALQAAMAEGQAS
ATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLTPPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEP
ALAAILMDSYLNAGQIDQGWAIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY
ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGVIPKGDTHFGNILETQTPRAA
ADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIPLYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQ
GNRARLAQLWAVRAKTGAAPAPATAS
>Mature_426_residues
MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTDATAAKDAAALQAAMAEGQAS
ATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLTPPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEP
ALAAILMDSYLNAGQIDQGWAIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY
ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGVIPKGDTHFGNILETQTPRAA
ADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIPLYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQ
GNRARLAQLWAVRAKTGAAPAPATAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44564; Mature: 44564

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTD
CCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHH
ATAAKDAAALQAAMAEGQASATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLT
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
PPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEPALAAILMDSYLNAGQIDQGW
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
AIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY
CHHHHCCHHHHHCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEE
ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGV
EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCCCCEEEEEEECCCCCC
IPKGDTHFGNILETQTPRAAADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIP
CCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCCCCHHH
LYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQGNRARLAQLWAVRAKTGAAP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
APATAS
CCCCCC
>Mature Secondary Structure
MFKRFRSMPATAMAAVLGCALMTTATPAAAQKKPKKEEAAKGKSLSPSKGFAPALKKMTD
CCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHH
ATAAKDAAALQAAMAEGQASATSPDDQYLLSFYQLQLGILNKDTALQGQGLDGMIDSGLT
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
PPENLATYNFYSGNFAYGAKNYAKAIQRLEAAKAAGSTEPALAAILMDSYLNAGQIDQGW
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
AIAKAGIDAARAAGTKPSEDLYVRPAQAFQKANRTNEMLDVLTMRVEDYPSPATWRNTLY
CHHHHCCHHHHHCCCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEE
ILLQQSGGDKELNLDILRLMRATNAMTQRPEYLEYSALAVEAGYPGEAIAVIRQGQNNGV
EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCCCCEEEEEEECCCCCC
IPKGDTHFGNILETQTPRAAADAAAVAADANKAATLNNPKAARSTADVLVGIGQPAKAIP
CCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCCCCHHH
LYEAALKAAPNDAIAQFRLGVAQALAGQVDAAAASFAKIQGNRARLAQLWAVRAKTGAAP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
APATAS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA