Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486773

Identifier: 103486773

GI number: 103486773

Start: 1344670

End: 1346292

Strand: Reverse

Name: 103486773

Synonym: Sala_1287

Alternate gene names: NA

Gene position: 1346292-1344670 (Counterclockwise)

Preceding gene: 103486775

Following gene: 103486772

Centisome position: 40.25

GC content: 68.45

Gene sequence:

>1623_bases
ATGATCGCGACCATCTTGCGCCAGGCACCCGCCGACCGGCGCACGCGCGTCACGGCGTGGCGGCAGCTCTCCGATATTCT
GGCGCAGCGCGGCAATCAACTGGCAGAAGATGATATTCGGCGCAGCCTGCATGCGCTCGCCGTGCTGCGCCCGCATGTTC
CCGAGGCCGTTCGGCGAGATTGCGCGCGCGCGCTCGCGCGACACGGGCGCTTTGCCCCGCTTGTCGCCTTTTATGCCAAC
GACGTGCCCGCCGTTTCGGCCGCGATGTTGCGCGACGTGCGATTGAGCGAGACCGACTGGCTAGCGCTGCTGCCCGCGAC
CAATGCCATGGCACGGTCGGTGCTGGCGGGACGTCGTGACCTGCCCGACGGCGTCGGACGCGCGCTGGCGGCGCTCGGTG
CCGCGTCGGTGGCGCTGCCGCAACCCGCCGCCGTGGTCGAGGCTGAAGCCATGCCGTCATCGACGACCGATGAGACCGTC
GGCGCCGCGCCCAGCCAGATCAGCGAACTGGTCCGCCGAATCGACAAATATCAATCGCGCCGCGGCCAACCTGCATCGGC
GCGCAAGGCGCGGCGGTCCTTCCAGTTCGAAACCGGACCCGACGGCGTGATTCATTGGGTCGATGGCGTCACGCGCGGCG
CGGTCATCGGCCTGTCGATCGCTCATGCGGCTTTCGGCGGCGAGCCCGGCGCCGACGCCGCCGCGGCGGGCGCCTTTCGC
CAGCGCGCCGAGATCGTCAGCGCGCGCATGTGGCTGGAGGGCATGGCCGACGAAGCCGGTGAATGGCGTTTCTCGGCGCT
GCCCTGGTTCGACCCGGCGACGGGACAGTTCCGCGGCTATCGCGGGACCGCGCGGCGCCCGCAACCGAATGAAATGCCCT
ATGGACGACCGCAGGAGGAGGATCCGGGCGATTCGATCCGCCAGCTCATTCACGAACTGCGCAGTCCGCTCAACGCCATA
TCGGGCTTTGCGCAGATCATCTCGGGTCAGATGTTCGGGCCGGTCAGCCAGTCCTATCGCGCCATGGCCGAAACGATCGT
CGCCGACGCAGCCTCGGTGCAGTCGATCATCGACGACCTCGAGACCGCGGCGCGGCGCGGCCATGCGGTCGCCGATCAGG
CGTCGGACGAAATTGTCGACGTCGGCGCCATAGTGAAGCAGGTCGAAGCCGATCTTGGGGCACTGCTTGCTGAACAGCGC
ATCGAGATGACGCTCGCGCGGGTGGGTGCCGGACCCTTTCTGGGGCGCGCCCATGACGCCGACGTCAGGCGCATGATCGG
ACGCCTGCTCACCGCGCTGGTCGATATCTGCGAGCCCGGCGGCATCCTGGTCGGCCAACTCGTCACCGAATCACCGCACG
ACGACATGCTCCAGCTTCGCATCGTGCGCCCGGCGGCAATCCGCTTTGCCACCGCCACCGACCTGCTCGATCCGGGGTTC
AGCCCCGAAGGCGAAGCGCCGGGAGCCGCCGTGCTCAGCCTCGGTTTTTCGCTCCGCCTCGTCGACAGCCTTGCCCGCGC
GGCGGGGGGGCGTCTCGATATCGGGCATAACGCCTTGACCTTGCACCTGCCGTCCGTCACCTCGAAGCCCGAAGCCGAAC
GGGAGCTTCAGCAAGGCGAATAG

Upstream 100 bases:

>100_bases
CGGATGGTTAAGGCACTTTCGTGACCGGATGATTCACGCTAGCCGGTAAGCATGGGATAACCGATGACTGTGGGGCTGGT
TTTGCGTGACTGCTGACTCG

Downstream 100 bases:

>100_bases
GTCGCACGCCGGACGGCGAGGGGGCAAGGTGCAGTCTGCGGGCAGTTTTTTCGCATATCCACCCGCGTCCGAGTTGATCC
GGCTCGGCGATGGCGAGCGG

Product: histidine kinase A-like protein

Products: NA

Alternate protein names: Two-Component Signal Transduction Histidine Kinase; Histidine Kinase A-Like Protein; Signal Transduction Histidine Kinase

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRDCARALARHGRFAPLVAFYAN
DVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRDLPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETV
GAAPSQISELVRRIDKYQSRRGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR
QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEEDPGDSIRQLIHELRSPLNAI
SGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDLETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQR
IEMTLARVGAGPFLGRAHDADVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF
SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE

Sequences:

>Translated_540_residues
MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRDCARALARHGRFAPLVAFYAN
DVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRDLPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETV
GAAPSQISELVRRIDKYQSRRGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR
QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEEDPGDSIRQLIHELRSPLNAI
SGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDLETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQR
IEMTLARVGAGPFLGRAHDADVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF
SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE
>Mature_540_residues
MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRDCARALARHGRFAPLVAFYAN
DVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRDLPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETV
GAAPSQISELVRRIDKYQSRRGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR
QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEEDPGDSIRQLIHELRSPLNAI
SGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDLETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQR
IEMTLARVGAGPFLGRAHDADVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF
SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57804; Mature: 57804

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRD
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
CARALARHGRFAPLVAFYANDVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRD
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCC
LPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETVGAAPSQISELVRRIDKYQSR
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHH
RGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR
CCCCHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEE
HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DPGDSIRQLIHELRSPLNAISGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQRIEMTLARVGAGPFLGRAHDA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
DVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF
HHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCC
SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRD
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
CARALARHGRFAPLVAFYANDVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRD
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCC
LPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETVGAAPSQISELVRRIDKYQSR
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHH
RGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR
CCCCHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEE
HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DPGDSIRQLIHELRSPLNAISGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQRIEMTLARVGAGPFLGRAHDA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
DVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF
HHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCC
SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA