| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486773
Identifier: 103486773
GI number: 103486773
Start: 1344670
End: 1346292
Strand: Reverse
Name: 103486773
Synonym: Sala_1287
Alternate gene names: NA
Gene position: 1346292-1344670 (Counterclockwise)
Preceding gene: 103486775
Following gene: 103486772
Centisome position: 40.25
GC content: 68.45
Gene sequence:
>1623_bases ATGATCGCGACCATCTTGCGCCAGGCACCCGCCGACCGGCGCACGCGCGTCACGGCGTGGCGGCAGCTCTCCGATATTCT GGCGCAGCGCGGCAATCAACTGGCAGAAGATGATATTCGGCGCAGCCTGCATGCGCTCGCCGTGCTGCGCCCGCATGTTC CCGAGGCCGTTCGGCGAGATTGCGCGCGCGCGCTCGCGCGACACGGGCGCTTTGCCCCGCTTGTCGCCTTTTATGCCAAC GACGTGCCCGCCGTTTCGGCCGCGATGTTGCGCGACGTGCGATTGAGCGAGACCGACTGGCTAGCGCTGCTGCCCGCGAC CAATGCCATGGCACGGTCGGTGCTGGCGGGACGTCGTGACCTGCCCGACGGCGTCGGACGCGCGCTGGCGGCGCTCGGTG CCGCGTCGGTGGCGCTGCCGCAACCCGCCGCCGTGGTCGAGGCTGAAGCCATGCCGTCATCGACGACCGATGAGACCGTC GGCGCCGCGCCCAGCCAGATCAGCGAACTGGTCCGCCGAATCGACAAATATCAATCGCGCCGCGGCCAACCTGCATCGGC GCGCAAGGCGCGGCGGTCCTTCCAGTTCGAAACCGGACCCGACGGCGTGATTCATTGGGTCGATGGCGTCACGCGCGGCG CGGTCATCGGCCTGTCGATCGCTCATGCGGCTTTCGGCGGCGAGCCCGGCGCCGACGCCGCCGCGGCGGGCGCCTTTCGC CAGCGCGCCGAGATCGTCAGCGCGCGCATGTGGCTGGAGGGCATGGCCGACGAAGCCGGTGAATGGCGTTTCTCGGCGCT GCCCTGGTTCGACCCGGCGACGGGACAGTTCCGCGGCTATCGCGGGACCGCGCGGCGCCCGCAACCGAATGAAATGCCCT ATGGACGACCGCAGGAGGAGGATCCGGGCGATTCGATCCGCCAGCTCATTCACGAACTGCGCAGTCCGCTCAACGCCATA TCGGGCTTTGCGCAGATCATCTCGGGTCAGATGTTCGGGCCGGTCAGCCAGTCCTATCGCGCCATGGCCGAAACGATCGT CGCCGACGCAGCCTCGGTGCAGTCGATCATCGACGACCTCGAGACCGCGGCGCGGCGCGGCCATGCGGTCGCCGATCAGG CGTCGGACGAAATTGTCGACGTCGGCGCCATAGTGAAGCAGGTCGAAGCCGATCTTGGGGCACTGCTTGCTGAACAGCGC ATCGAGATGACGCTCGCGCGGGTGGGTGCCGGACCCTTTCTGGGGCGCGCCCATGACGCCGACGTCAGGCGCATGATCGG ACGCCTGCTCACCGCGCTGGTCGATATCTGCGAGCCCGGCGGCATCCTGGTCGGCCAACTCGTCACCGAATCACCGCACG ACGACATGCTCCAGCTTCGCATCGTGCGCCCGGCGGCAATCCGCTTTGCCACCGCCACCGACCTGCTCGATCCGGGGTTC AGCCCCGAAGGCGAAGCGCCGGGAGCCGCCGTGCTCAGCCTCGGTTTTTCGCTCCGCCTCGTCGACAGCCTTGCCCGCGC GGCGGGGGGGCGTCTCGATATCGGGCATAACGCCTTGACCTTGCACCTGCCGTCCGTCACCTCGAAGCCCGAAGCCGAAC GGGAGCTTCAGCAAGGCGAATAG
Upstream 100 bases:
>100_bases CGGATGGTTAAGGCACTTTCGTGACCGGATGATTCACGCTAGCCGGTAAGCATGGGATAACCGATGACTGTGGGGCTGGT TTTGCGTGACTGCTGACTCG
Downstream 100 bases:
>100_bases GTCGCACGCCGGACGGCGAGGGGGCAAGGTGCAGTCTGCGGGCAGTTTTTTCGCATATCCACCCGCGTCCGAGTTGATCC GGCTCGGCGATGGCGAGCGG
Product: histidine kinase A-like protein
Products: NA
Alternate protein names: Two-Component Signal Transduction Histidine Kinase; Histidine Kinase A-Like Protein; Signal Transduction Histidine Kinase
Number of amino acids: Translated: 540; Mature: 540
Protein sequence:
>540_residues MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRDCARALARHGRFAPLVAFYAN DVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRDLPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETV GAAPSQISELVRRIDKYQSRRGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEEDPGDSIRQLIHELRSPLNAI SGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDLETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQR IEMTLARVGAGPFLGRAHDADVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE
Sequences:
>Translated_540_residues MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRDCARALARHGRFAPLVAFYAN DVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRDLPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETV GAAPSQISELVRRIDKYQSRRGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEEDPGDSIRQLIHELRSPLNAI SGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDLETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQR IEMTLARVGAGPFLGRAHDADVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE >Mature_540_residues MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRDCARALARHGRFAPLVAFYAN DVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRDLPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETV GAAPSQISELVRRIDKYQSRRGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEEDPGDSIRQLIHELRSPLNAI SGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDLETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQR IEMTLARVGAGPFLGRAHDADVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57804; Mature: 57804
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRD CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH CARALARHGRFAPLVAFYANDVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRD HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCC LPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETVGAAPSQISELVRRIDKYQSR CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHH RGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR CCCCHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEE HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DPGDSIRQLIHELRSPLNAISGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQRIEMTLARVGAGPFLGRAHDA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH DVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF HHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCC SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCHHHHHHCCC >Mature Secondary Structure MIATILRQAPADRRTRVTAWRQLSDILAQRGNQLAEDDIRRSLHALAVLRPHVPEAVRRD CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH CARALARHGRFAPLVAFYANDVPAVSAAMLRDVRLSETDWLALLPATNAMARSVLAGRRD HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCC LPDGVGRALAALGAASVALPQPAAVVEAEAMPSSTTDETVGAAPSQISELVRRIDKYQSR CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHH RGQPASARKARRSFQFETGPDGVIHWVDGVTRGAVIGLSIAHAAFGGEPGADAAAAGAFR CCCCHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH QRAEIVSARMWLEGMADEAGEWRFSALPWFDPATGQFRGYRGTARRPQPNEMPYGRPQEE HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DPGDSIRQLIHELRSPLNAISGFAQIISGQMFGPVSQSYRAMAETIVADAASVQSIIDDL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ETAARRGHAVADQASDEIVDVGAIVKQVEADLGALLAEQRIEMTLARVGAGPFLGRAHDA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH DVRRMIGRLLTALVDICEPGGILVGQLVTESPHDDMLQLRIVRPAAIRFATATDLLDPGF HHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCC SPEGEAPGAAVLSLGFSLRLVDSLARAAGGRLDIGHNALTLHLPSVTSKPEAERELQQGE CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA