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The map label for this gene is ycfH [C]

Identifier: 103486746

GI number: 103486746

Start: 1313044

End: 1313820

Strand: Direct

Name: ycfH [C]

Synonym: Sala_1260

Alternate gene names: 103486746

Gene position: 1313044-1313820 (Clockwise)

Preceding gene: 103486745

Following gene: 103486747

Centisome position: 39.25

GC content: 63.84

Gene sequence:

>777_bases
ATGCTCGTCGATTCGCACTGTCACCTCAATTACAAGGGCCTCGCCGAGCAGCAGGACGAGGTGCTGGCGCGCGCACGAGA
GCGGGGCGTGACCGCGATGCTCAACATCGCGACGCGCGAAAGCGAGTGGGACGATGTGCTCGCCGCCGCCGAGGCGAACG
ACGATGTGTGGGCGAGCGTCGGCATACACCCGCACGACGCCGACCAGCATCCCGACGTCGATACGGCCAAGCTGATCCAG
CGCGCCGCGCATCCGCGGGTGATCGGAATCGGCGAGACCGGGCTCGACTATTACTACGACAAGAGCGATCGCACCCGGCA
ACAGGACAGCTTTCGCCGCCATATCCATGCGGCGCAGGCCACGGGCCTGCCGGTGATCGTGCATATGCGCGACGCCGAGG
CCGACACGCTGGCACTGCTCGGCGAGGAAATGGCAAGGGCAAGCTTTCCCGGTGTGATCCACTGCTTCACCGCAAGCGAC
GCTTTTGCGCGCAAAGCGCTCGATATCGGCCTTTATATTTCGATCTCCGGCATTGTGACGTTCAAAAACGCCACCGACTT
GCAGGCAACGGCCAAATGGCTGCCGCGGGAGCGGTTGCTGGTCGAAACCGATGCCCCTTTCCTCGCCCCGGTGCCGCATC
GCGGCAAGACCGGCGAGCCGGCGTTCGTCGCCGATACGCTGGCGTTTCTTGCCGATCTGCGTGACGAGGATCCGGATGCG
CTTGCAGCCGCGACAAGCGCCAATTTCTATTCGCTTTTCAACAAGGCGGCGGCATGA

Upstream 100 bases:

>100_bases
GGTTCGCCAGACTGGCGGCGAGCGGTTTCACGGTCGGGCAGCCCGTGCCGATCTTTCCGCGCCTCGACCTGCCCGAAGAG
GAGGGGGAAGGGGAGGCGTG

Downstream 100 bases:

>100_bases
CGTCACGCGGCGCATGAAGGTTAGAATCCTTGGCTGCGGAACGTCGTCGGGCGTTCCCCGCATCGGCAATGACTGGGGGC
AGTGTGACCCCGATAATCCA

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLVDSHCHLNYKGLAEQQDEVLARARERGVTAMLNIATRESEWDDVLAAAEANDDVWASVGIHPHDADQHPDVDTAKLIQ
RAAHPRVIGIGETGLDYYYDKSDRTRQQDSFRRHIHAAQATGLPVIVHMRDAEADTLALLGEEMARASFPGVIHCFTASD
AFARKALDIGLYISISGIVTFKNATDLQATAKWLPRERLLVETDAPFLAPVPHRGKTGEPAFVADTLAFLADLRDEDPDA
LAAATSANFYSLFNKAAA

Sequences:

>Translated_258_residues
MLVDSHCHLNYKGLAEQQDEVLARARERGVTAMLNIATRESEWDDVLAAAEANDDVWASVGIHPHDADQHPDVDTAKLIQ
RAAHPRVIGIGETGLDYYYDKSDRTRQQDSFRRHIHAAQATGLPVIVHMRDAEADTLALLGEEMARASFPGVIHCFTASD
AFARKALDIGLYISISGIVTFKNATDLQATAKWLPRERLLVETDAPFLAPVPHRGKTGEPAFVADTLAFLADLRDEDPDA
LAAATSANFYSLFNKAAA
>Mature_258_residues
MLVDSHCHLNYKGLAEQQDEVLARARERGVTAMLNIATRESEWDDVLAAAEANDDVWASVGIHPHDADQHPDVDTAKLIQ
RAAHPRVIGIGETGLDYYYDKSDRTRQQDSFRRHIHAAQATGLPVIVHMRDAEADTLALLGEEMARASFPGVIHCFTASD
AFARKALDIGLYISISGIVTFKNATDLQATAKWLPRERLLVETDAPFLAPVPHRGKTGEPAFVADTLAFLADLRDEDPDA
LAAATSANFYSLFNKAAA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=275, Percent_Identity=26.9090909090909, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI225903424, Length=271, Percent_Identity=23.9852398523985, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI225903439, Length=238, Percent_Identity=26.890756302521, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=28.0898876404494, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=28.0898876404494, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=28.3088235294118, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=30.3964757709251, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=26.5625, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=45.9770114942529, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI48994985, Length=261, Percent_Identity=32.9501915708812, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI87082439, Length=259, Percent_Identity=32.8185328185328, Blast_Score=130, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17559024, Length=276, Percent_Identity=27.536231884058, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=26.4150943396226, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=28.6713286713287, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24586117, Length=271, Percent_Identity=26.9372693726937, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI221330018, Length=269, Percent_Identity=26.3940520446097, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28244; Mature: 28244

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVDSHCHLNYKGLAEQQDEVLARARERGVTAMLNIATRESEWDDVLAAAEANDDVWASV
CEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEE
GIHPHDADQHPDVDTAKLIQRAAHPRVIGIGETGLDYYYDKSDRTRQQDSFRRHIHAAQA
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHC
TGLPVIVHMRDAEADTLALLGEEMARASFPGVIHCFTASDAFARKALDIGLYISISGIVT
CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEEEEEEEEEEEEE
FKNATDLQATAKWLPRERLLVETDAPFLAPVPHRGKTGEPAFVADTLAFLADLRDEDPDA
ECCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
LAAATSANFYSLFNKAAA
HHHHHCHHHHHHHHHHCC
>Mature Secondary Structure
MLVDSHCHLNYKGLAEQQDEVLARARERGVTAMLNIATRESEWDDVLAAAEANDDVWASV
CEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEE
GIHPHDADQHPDVDTAKLIQRAAHPRVIGIGETGLDYYYDKSDRTRQQDSFRRHIHAAQA
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHC
TGLPVIVHMRDAEADTLALLGEEMARASFPGVIHCFTASDAFARKALDIGLYISISGIVT
CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEEEEEEEEEEEEE
FKNATDLQATAKWLPRERLLVETDAPFLAPVPHRGKTGEPAFVADTLAFLADLRDEDPDA
ECCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
LAAATSANFYSLFNKAAA
HHHHHCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]