| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is mltB [H]
Identifier: 103486740
GI number: 103486740
Start: 1306740
End: 1307804
Strand: Direct
Name: mltB [H]
Synonym: Sala_1254
Alternate gene names: 103486740
Gene position: 1306740-1307804 (Clockwise)
Preceding gene: 103486735
Following gene: 103486741
Centisome position: 39.06
GC content: 65.26
Gene sequence:
>1065_bases ATGACGCAAACTAGCATTTTCATAATACGCAAATATTTCGTACTTTCAGCGGCAATACTGGGGGCGTGGATCGTTGCTGC CCAGGCGCCGCTCCATGCGCAGAGCGCCGATGCCGGGTTCGACGCCTATGTCCAGTCGCTCTGGCCGAAAGCGCAGGCGC GTGGCGTGTCGCGCGCGACGTTCGACCGGGTGACCGCCGGACTGCGCTACAATAGCCGGGTGGTGGCGCTCGACCGCGAC AATCTGGGATCGCCGCCCAGCCCGAACACACCGATACCTGCTTTCGCGCCCTATAAGGCCCGGCACGTCGATGCCGCGCG CATCAACGGCGGGCGCCGCGTCCACGACCGCCTGCTGCCGCTGCTCGCGCGCATCGAGGCACGAACGGGTGTGCCGACGA GCATCATGATCGCAATTTACGGGCATGAGACCGCCTATGGCCAGGTCACGGGCAGCTTCGACCTGCCCGAAGCGCTCGCG ACGCTGGCGTATGAGGGACGCCGACGCAGCCTGTTCGAGCCCGAGCTGATCGCGACGATGGTGATGGTCGAACGCGGCGT GCCGCGCGATGTGCTGAAGGGGAGCTGGGCCGGCGCCTTCGGTTATCCGCAGTTCCTCCCTTCGGTCTATCTGCGTGTCG CCGAGGACGGCGATGGCGACGGCGTGGCGCGGATATGGTCGAGCGAGGCCGATGCGATCGAGTCGATCGGCGCCTATCTG CGCAACGCGGGCTGGCGCGCGGGTCAGCCATGGGGCGTTGCGGTCAACGTTCCGGCGACTTTCGATCGAGCCGCTGTTGC CAACCGCCTGACCCCCACGCGCTGTCCGCGCGTGTTCGAGCGTCACAGCCGCTGGCGCTCGATGGCCGAGTGGCGCGCCG CCGGGCTTCAGCCGGTCAGTGGGCGCTGGCCCGACGACGATGTTCAGGCGACCTTGCTCGAACCCGACGGGCCGGGGCGG ACCGCTTATTTGCTCACCGGTAACTATCGTGCGATACTGGACTATAATTGTTCCAATTTTTACGCATTGTCTGTGGGATT GCTGGCGGATGAAATCGATCGTTAG
Upstream 100 bases:
>100_bases ACCTTGTTCCAACGGTCCGCCTTGCGAATGACTCGCCCTGTCCCGCGAGCGCCTAGCCAAGCGGCTCGATTCTGTGCGAA ACCATCCCTATGGGTGGGTC
Downstream 100 bases:
>100_bases GGACGGGTGCCTGATCGCGGGAGCAGCCCTGATGCTGTCCGGTTGCGGCGGGGTTGATGGCGCGCGCAGTGCGCGACCGG TGCCCAACCCGGTCGCAGCA
Product: lytic murein transglycosylase
Products: Muramic Acid Residue [C]
Alternate protein names: 35 kDa soluble lytic transglycosylase; Murein hydrolase B; Slt35 [H]
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MTQTSIFIIRKYFVLSAAILGAWIVAAQAPLHAQSADAGFDAYVQSLWPKAQARGVSRATFDRVTAGLRYNSRVVALDRD NLGSPPSPNTPIPAFAPYKARHVDAARINGGRRVHDRLLPLLARIEARTGVPTSIMIAIYGHETAYGQVTGSFDLPEALA TLAYEGRRRSLFEPELIATMVMVERGVPRDVLKGSWAGAFGYPQFLPSVYLRVAEDGDGDGVARIWSSEADAIESIGAYL RNAGWRAGQPWGVAVNVPATFDRAAVANRLTPTRCPRVFERHSRWRSMAEWRAAGLQPVSGRWPDDDVQATLLEPDGPGR TAYLLTGNYRAILDYNCSNFYALSVGLLADEIDR
Sequences:
>Translated_354_residues MTQTSIFIIRKYFVLSAAILGAWIVAAQAPLHAQSADAGFDAYVQSLWPKAQARGVSRATFDRVTAGLRYNSRVVALDRD NLGSPPSPNTPIPAFAPYKARHVDAARINGGRRVHDRLLPLLARIEARTGVPTSIMIAIYGHETAYGQVTGSFDLPEALA TLAYEGRRRSLFEPELIATMVMVERGVPRDVLKGSWAGAFGYPQFLPSVYLRVAEDGDGDGVARIWSSEADAIESIGAYL RNAGWRAGQPWGVAVNVPATFDRAAVANRLTPTRCPRVFERHSRWRSMAEWRAAGLQPVSGRWPDDDVQATLLEPDGPGR TAYLLTGNYRAILDYNCSNFYALSVGLLADEIDR >Mature_353_residues TQTSIFIIRKYFVLSAAILGAWIVAAQAPLHAQSADAGFDAYVQSLWPKAQARGVSRATFDRVTAGLRYNSRVVALDRDN LGSPPSPNTPIPAFAPYKARHVDAARINGGRRVHDRLLPLLARIEARTGVPTSIMIAIYGHETAYGQVTGSFDLPEALAT LAYEGRRRSLFEPELIATMVMVERGVPRDVLKGSWAGAFGYPQFLPSVYLRVAEDGDGDGVARIWSSEADAIESIGAYLR NAGWRAGQPWGVAVNVPATFDRAAVANRLTPTRCPRVFERHSRWRSMAEWRAAGLQPVSGRWPDDDVQATLLEPDGPGRT AYLLTGNYRAILDYNCSNFYALSVGLLADEIDR
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG2951
COG function: function code M; Membrane-bound lytic murein transglycosylase B
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789053, Length=317, Percent_Identity=29.6529968454259, Blast_Score=100, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011757 [H]
Pfam domain/function: NA
EC number: 3.2.1.- [C]
Molecular weight: Translated: 38804; Mature: 38673
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTSIFIIRKYFVLSAAILGAWIVAAQAPLHAQSADAGFDAYVQSLWPKAQARGVSRAT CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHCCCCHHH FDRVTAGLRYNSRVVALDRDNLGSPPSPNTPIPAFAPYKARHVDAARINGGRRVHDRLLP HHHHHHCCEECCEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHH LLARIEARTGVPTSIMIAIYGHETAYGQVTGSFDLPEALATLAYEGRRRSLFEPELIATM HHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHH VMVERGVPRDVLKGSWAGAFGYPQFLPSVYLRVAEDGDGDGVARIWSSEADAIESIGAYL HHHHCCCCHHHHCCCCCCCCCCHHHHHHHHEEEECCCCCCCEEEHHCCHHHHHHHHHHHH RNAGWRAGQPWGVAVNVPATFDRAAVANRLTPTRCPRVFERHSRWRSMAEWRAAGLQPVS HHCCCCCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GRWPDDDVQATLLEPDGPGRTAYLLTGNYRAILDYNCSNFYALSVGLLADEIDR CCCCCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCCEEEEEHHHHHHHHCC >Mature Secondary Structure TQTSIFIIRKYFVLSAAILGAWIVAAQAPLHAQSADAGFDAYVQSLWPKAQARGVSRAT CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHCCCCHHH FDRVTAGLRYNSRVVALDRDNLGSPPSPNTPIPAFAPYKARHVDAARINGGRRVHDRLLP HHHHHHCCEECCEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHH LLARIEARTGVPTSIMIAIYGHETAYGQVTGSFDLPEALATLAYEGRRRSLFEPELIATM HHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHH VMVERGVPRDVLKGSWAGAFGYPQFLPSVYLRVAEDGDGDGVARIWSSEADAIESIGAYL HHHHCCCCHHHHCCCCCCCCCCHHHHHHHHEEEECCCCCCCEEEHHCCHHHHHHHHHHHH RNAGWRAGQPWGVAVNVPATFDRAAVANRLTPTRCPRVFERHSRWRSMAEWRAAGLQPVS HHCCCCCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GRWPDDDVQATLLEPDGPGRTAYLLTGNYRAILDYNCSNFYALSVGLLADEIDR CCCCCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCCEEEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
General reaction: Cleavage Bond [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7476170; 7789526; 9205837; 9278503; 3553176; 9761817; 10570954; 10545329; 10684641 [H]