Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 103486741

GI number: 103486741

Start: 1307788

End: 1308750

Strand: Direct

Name: rlpA [H]

Synonym: Sala_1255

Alternate gene names: 103486741

Gene position: 1307788-1308750 (Clockwise)

Preceding gene: 103486740

Following gene: 103486742

Centisome position: 39.09

GC content: 66.67

Gene sequence:

>963_bases
ATGAAATCGATCGTTAGGGACGGGTGCCTGATCGCGGGAGCAGCCCTGATGCTGTCCGGTTGCGGCGGGGTTGATGGCGC
GCGCAGTGCGCGACCGGTGCCCAACCCGGTCGCAGCATCGCAGGGCGTCTCCGACGTTCCGGTGATCGTCGGGGACTCCT
ATAAGGTGGGCGATGTCACCTATACGCCCGCCGACGTCATCGATTATGACGATGTCGGCTATGCGTCCTGGTACGGCGAT
GAGGCAGCCGGCAAGGCCACCGCCAATGGCGAGATTTTCGATCCGGCGCGGATCAGCGCCGCGCACAAGACCTTGCCGCT
GCCGAGCTATGTCGAGGTGACGGCGCTCGACACCGGACGAACAATCCTTGTCCGCGTCAACGATCGCGGGCCGATGGCGA
ACAACCAGCTGATTGCCCTGTCGCCTGCCGCCGCGATGCAACTCGGGCTGGAGCGGGGTCTGACAGCTGTTCGTGTTCGC
CGCACCAATCCACCCGCCGCCGAACGCGCGCAACTGCGCGCAGGGAAGGCCGTTCCGGAACGGCTGGCCACGCCGGCATC
GTTGTTGGCCATCCTTCGAACGAAGGCGAGTGCCTTGCCCGCACCGAAAGGCGCGAGCGAACCCGCGCCGCCGGTTGCCT
CATCGAAAGCGAAGCCGGGGGACGACCGCATGGCCGTGCAGGGCAATATCACGCCGGCGATCATGAAACAGACGCCGGCG
AAACCCGCATCCCCGGCGAAACCTGCTGTCGCCACGGGCCAATATGTCGTGCAGATCGGCGCGTTCAGCACCGAAGCACG
CGCCAGGGCCGCGGCCAAGCCGGTAGGTGGTCGGGTGTCGAGGGCGGGCAATCTGTGGCGCGTTCGGATCGGCCCCTTCG
CCAGCGAAGCCGACGCTCAGGGTGCGCTGGCCACGGCGAGATCGAAGGGATTTCGCGATGCCGCGCTCCTCCGCGATCGA
TGA

Upstream 100 bases:

>100_bases
GGGCCGGGGCGGACCGCTTATTTGCTCACCGGTAACTATCGTGCGATACTGGACTATAATTGTTCCAATTTTTACGCATT
GTCTGTGGGATTGCTGGCGG

Downstream 100 bases:

>100_bases
TGCGGGCGAGGGGCAAATTCGCCCTGGGCTATGGCGCTGCTACGGCGCTGGCCCTGCTGGCGAGCAATGTCGCTTTTTGG
CCCGCTGCAGCGGCGAGGGA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKSIVRDGCLIAGAALMLSGCGGVDGARSARPVPNPVAASQGVSDVPVIVGDSYKVGDVTYTPADVIDYDDVGYASWYGD
EAAGKATANGEIFDPARISAAHKTLPLPSYVEVTALDTGRTILVRVNDRGPMANNQLIALSPAAAMQLGLERGLTAVRVR
RTNPPAAERAQLRAGKAVPERLATPASLLAILRTKASALPAPKGASEPAPPVASSKAKPGDDRMAVQGNITPAIMKQTPA
KPASPAKPAVATGQYVVQIGAFSTEARARAAAKPVGGRVSRAGNLWRVRIGPFASEADAQGALATARSKGFRDAALLRDR

Sequences:

>Translated_320_residues
MKSIVRDGCLIAGAALMLSGCGGVDGARSARPVPNPVAASQGVSDVPVIVGDSYKVGDVTYTPADVIDYDDVGYASWYGD
EAAGKATANGEIFDPARISAAHKTLPLPSYVEVTALDTGRTILVRVNDRGPMANNQLIALSPAAAMQLGLERGLTAVRVR
RTNPPAAERAQLRAGKAVPERLATPASLLAILRTKASALPAPKGASEPAPPVASSKAKPGDDRMAVQGNITPAIMKQTPA
KPASPAKPAVATGQYVVQIGAFSTEARARAAAKPVGGRVSRAGNLWRVRIGPFASEADAQGALATARSKGFRDAALLRDR
>Mature_320_residues
MKSIVRDGCLIAGAALMLSGCGGVDGARSARPVPNPVAASQGVSDVPVIVGDSYKVGDVTYTPADVIDYDDVGYASWYGD
EAAGKATANGEIFDPARISAAHKTLPLPSYVEVTALDTGRTILVRVNDRGPMANNQLIALSPAAAMQLGLERGLTAVRVR
RTNPPAAERAQLRAGKAVPERLATPASLLAILRTKASALPAPKGASEPAPPVASSKAKPGDDRMAVQGNITPAIMKQTPA
KPASPAKPAVATGQYVVQIGAFSTEARARAAAKPVGGRVSRAGNLWRVRIGPFASEADAQGALATARSKGFRDAALLRDR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=355, Percent_Identity=29.8591549295775, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 32945; Mature: 32945

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIVRDGCLIAGAALMLSGCGGVDGARSARPVPNPVAASQGVSDVPVIVGDSYKVGDVT
CCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCEEECCEE
YTPADVIDYDDVGYASWYGDEAAGKATANGEIFDPARISAAHKTLPLPSYVEVTALDTGR
ECCHHHCCCCCCCCCEECCCCCCCCCCCCCCEECCHHHHHHHHCCCCCCCEEEEEECCCC
TILVRVNDRGPMANNQLIALSPAAAMQLGLERGLTAVRVRRTNPPAAERAQLRAGKAVPE
EEEEEECCCCCCCCCCEEEECCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHH
RLATPASLLAILRTKASALPAPKGASEPAPPVASSKAKPGDDRMAVQGNITPAIMKQTPA
HHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCC
KPASPAKPAVATGQYVVQIGAFSTEARARAAAKPVGGRVSRAGNLWRVRIGPFASEADAQ
CCCCCCCCCEECCEEEEEEECCCCHHHHHHHCCCCCCCHHCCCCEEEEEECCCCCCCCCC
GALATARSKGFRDAALLRDR
CHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MKSIVRDGCLIAGAALMLSGCGGVDGARSARPVPNPVAASQGVSDVPVIVGDSYKVGDVT
CCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCEEECCEE
YTPADVIDYDDVGYASWYGDEAAGKATANGEIFDPARISAAHKTLPLPSYVEVTALDTGR
ECCHHHCCCCCCCCCEECCCCCCCCCCCCCCEECCHHHHHHHHCCCCCCCEEEEEECCCC
TILVRVNDRGPMANNQLIALSPAAAMQLGLERGLTAVRVRRTNPPAAERAQLRAGKAVPE
EEEEEECCCCCCCCCCEEEECCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHH
RLATPASLLAILRTKASALPAPKGASEPAPPVASSKAKPGDDRMAVQGNITPAIMKQTPA
HHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCC
KPASPAKPAVATGQYVVQIGAFSTEARARAAAKPVGGRVSRAGNLWRVRIGPFASEADAQ
CCCCCCCCCEECCEEEEEEECCCCHHHHHHHCCCCCCCHHCCCCEEEEEECCCCCCCCCC
GALATARSKGFRDAALLRDR
CHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]