| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486687
Identifier: 103486687
GI number: 103486687
Start: 1240249
End: 1240599
Strand: Reverse
Name: 103486687
Synonym: Sala_1199
Alternate gene names: NA
Gene position: 1240599-1240249 (Counterclockwise)
Preceding gene: 103486688
Following gene: 103486686
Centisome position: 37.09
GC content: 59.26
Gene sequence:
>351_bases ATGACCGCCTATCTCGCGCCGATCGGCCTTCTGTTCCTGTCCAACATCTTCATGACCTTTGCCTGGTATGGGCAGCTTGG CGCCGTGTCGCGGCCGATGTGGCTTGCGATAGTGATCGCCTGGGGCATAGCCTTTTTCGAATACTGCCTCGTTATCCCCG CCAACCGCATCGGCTATGGCGTCTACACGGCGGCCGAACTCAAGACCTTGCAGGAAATCGTCACGCTGGTCATATTCGCC GGCTTCGCGGTCTTCTGGCTCGGAGAAAGGCTGACCGTGAACCATCTCGTCGGCTTCGGACTGATTGCGGCGGGGGCGTT TTTCATCTTCAAGGGGCCGATTGCGGCCTGA
Upstream 100 bases:
>100_bases TCGAACATTCGGCCCATATGCCGATGGTTGAGGAGCCGGGGCGTTTCTTTGCGGCGCTGCTTCGCGACGTTCTTCCCCTG ACGGACGCGGAAGCGACACC
Downstream 100 bases:
>100_bases CAGAAAGCCAATAGCGACATGGAAACCCGTGCCGGCGATCCCGGAGCCTTTACCCGCTTCGACCTGACCCGCGTCCCCTC GCCCGCCTTCGTCGTCGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MTAYLAPIGLLFLSNIFMTFAWYGQLGAVSRPMWLAIVIAWGIAFFEYCLVIPANRIGYGVYTAAELKTLQEIVTLVIFA GFAVFWLGERLTVNHLVGFGLIAAGAFFIFKGPIAA
Sequences:
>Translated_116_residues MTAYLAPIGLLFLSNIFMTFAWYGQLGAVSRPMWLAIVIAWGIAFFEYCLVIPANRIGYGVYTAAELKTLQEIVTLVIFA GFAVFWLGERLTVNHLVGFGLIAAGAFFIFKGPIAA >Mature_115_residues TAYLAPIGLLFLSNIFMTFAWYGQLGAVSRPMWLAIVIAWGIAFFEYCLVIPANRIGYGVYTAAELKTLQEIVTLVIFAG FAVFWLGERLTVNHLVGFGLIAAGAFFIFKGPIAA
Specific function: Unknown
COG id: COG3169
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12715; Mature: 12584
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAYLAPIGLLFLSNIFMTFAWYGQLGAVSRPMWLAIVIAWGIAFFEYCLVIPANRIGYG CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCC VYTAAELKTLQEIVTLVIFAGFAVFWLGERLTVNHLVGFGLIAAGAFFIFKGPIAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TAYLAPIGLLFLSNIFMTFAWYGQLGAVSRPMWLAIVIAWGIAFFEYCLVIPANRIGYG CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCC VYTAAELKTLQEIVTLVIFAGFAVFWLGERLTVNHLVGFGLIAAGAFFIFKGPIAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA