Click here to switch to the map view.

The map label for this gene is 103486669

Identifier: 103486669

GI number: 103486669

Start: 1219980

End: 1221068

Strand: Reverse

Name: 103486669

Synonym: Sala_1181

Alternate gene names: NA

Gene position: 1221068-1219980 (Counterclockwise)

Preceding gene: 103486670

Following gene: 103486660

Centisome position: 36.5

GC content: 65.56

Gene sequence:

>1089_bases
GTGAAGTCGTCCAAACCCCTCCCTCCCATCGCGGGTCGCGGCGCGCCAACCAATCTGCGCCCGACGCGCACAGGGTCGGC
CGAGCGGGTCCCTGACGGCGACTGGCTGGACGCGGCGGCGGACGTTGACGGCGAGGCGCCCCGCTTGCGCACGACCGTCA
CGGTCGAGCATCCCAAAACCATCATCACGCGCAACAAGTCGCCCGACATCGGCTTCGACCGCTCGATCAACCCCTATCGC
GGCTGCGAACATGGCTGCATCTATTGCTTCGCGCGCCCGACGCACGCTTTTCACGACCTCTCGCCCGGTCTCGATTTCGA
AAGCCGCTTGTTCGCCAAGCCCAACGCCGCGGCACTGCTGCGCGCCGAACTGGCGAAGCCCAATTACCAGGTCGCGCCGC
TCGCGATCGGCACGAATACCGACGGCTATCAGCCGATCGAGCGCGAATGGGGGATAACGCGGTCGATCGTCGAAGTGCTC
GCCGAAACGCGCCACCCGCTGCTGATCACCACCAAATCCGACCGGCTGCTGCGCGACATCGACCTGCTCGCCGACATGGC
CCGCGACAATCTGGTCGGGGTCGCGATTTCGGTAACGACTCTTGACCCGAAGGTCGCGCGCACGCTCGAACCGCGCGTGC
CGCATCCGAAACGCCGCCTCGCCGCGATCCGCAAGCTCGTCGACGCGGGTGTGCCGACGCAGGTCAATATCTCGCCGATC
ATCCCCGCGATCACCGACCAAGAGATCGAGGCGATCATGGGAGCAGCGGCCGAAGCCGGGGCGATCCGTGCCTCCTACAT
ATTGATGCGGCTGCCCTATGAAGTGGCTCCGCTCTTCCGGGCATGGCTCGATGCGCATTATCCCGATCGCGCAGCCAAGG
TGATGCACATCGTGCAGGACATTCGCGACGGGCGCGACAATGACCCGAATTTCTTTACCCGGCTGAAAGGCCGGGGCATA
TGGCCGCAACTCATCCGTCAGCGCGTCAAACGCGCCGCCCGCGCGCACGGTATGGACCGAAGCTTTCCCCAGCTCCGCTC
GGACCTGTTCAGGCCGCCCGAGCGCGATGGGCAGATGGAGCTGTTCTGA

Upstream 100 bases:

>100_bases
AGTCGGCACAAGCCCTGCAATTTCGTCGAGTTGATGCCGAGACTGACCGAATAGCAAGTTTGTTCTTTATTTGTTCCAGA
CGGGCGATTATTCTCTCTCC

Downstream 100 bases:

>100_bases
ACCAATACCGTCGCCTCCGCGAAGGCGGGGGCGACGCTTTTCACTTACGCCTCTGCCAGCGACTTCAGCTTGTAATCCTT
ATAGTCATCGCGGATCTGGC

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MKSSKPLPPIAGRGAPTNLRPTRTGSAERVPDGDWLDAAADVDGEAPRLRTTVTVEHPKTIITRNKSPDIGFDRSINPYR
GCEHGCIYCFARPTHAFHDLSPGLDFESRLFAKPNAAALLRAELAKPNYQVAPLAIGTNTDGYQPIEREWGITRSIVEVL
AETRHPLLITTKSDRLLRDIDLLADMARDNLVGVAISVTTLDPKVARTLEPRVPHPKRRLAAIRKLVDAGVPTQVNISPI
IPAITDQEIEAIMGAAAEAGAIRASYILMRLPYEVAPLFRAWLDAHYPDRAAKVMHIVQDIRDGRDNDPNFFTRLKGRGI
WPQLIRQRVKRAARAHGMDRSFPQLRSDLFRPPERDGQMELF

Sequences:

>Translated_362_residues
MKSSKPLPPIAGRGAPTNLRPTRTGSAERVPDGDWLDAAADVDGEAPRLRTTVTVEHPKTIITRNKSPDIGFDRSINPYR
GCEHGCIYCFARPTHAFHDLSPGLDFESRLFAKPNAAALLRAELAKPNYQVAPLAIGTNTDGYQPIEREWGITRSIVEVL
AETRHPLLITTKSDRLLRDIDLLADMARDNLVGVAISVTTLDPKVARTLEPRVPHPKRRLAAIRKLVDAGVPTQVNISPI
IPAITDQEIEAIMGAAAEAGAIRASYILMRLPYEVAPLFRAWLDAHYPDRAAKVMHIVQDIRDGRDNDPNFFTRLKGRGI
WPQLIRQRVKRAARAHGMDRSFPQLRSDLFRPPERDGQMELF
>Mature_362_residues
MKSSKPLPPIAGRGAPTNLRPTRTGSAERVPDGDWLDAAADVDGEAPRLRTTVTVEHPKTIITRNKSPDIGFDRSINPYR
GCEHGCIYCFARPTHAFHDLSPGLDFESRLFAKPNAAALLRAELAKPNYQVAPLAIGTNTDGYQPIEREWGITRSIVEVL
AETRHPLLITTKSDRLLRDIDLLADMARDNLVGVAISVTTLDPKVARTLEPRVPHPKRRLAAIRKLVDAGVPTQVNISPI
IPAITDQEIEAIMGAAAEAGAIRASYILMRLPYEVAPLFRAWLDAHYPDRAAKVMHIVQDIRDGRDNDPNFFTRLKGRGI
WPQLIRQRVKRAARAHGMDRSFPQLRSDLFRPPERDGQMELF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 40350; Mature: 40350

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSKPLPPIAGRGAPTNLRPTRTGSAERVPDGDWLDAAADVDGEAPRLRTTVTVEHPKT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEECCCE
IITRNKSPDIGFDRSINPYRGCEHGCIYCFARPTHAFHDLSPGLDFESRLFAKPNAAALL
EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCHHHHHCCCCCHHHHH
RAELAKPNYQVAPLAIGTNTDGYQPIEREWGITRSIVEVLAETRHPLLITTKSDRLLRDI
HHHHCCCCCEEEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH
DLLADMARDNLVGVAISVTTLDPKVARTLEPRVPHPKRRLAAIRKLVDAGVPTQVNISPI
HHHHHHHHCCEEEEEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
IPAITDQEIEAIMGAAAEAGAIRASYILMRLPYEVAPLFRAWLDAHYPDRAAKVMHIVQD
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IRDGRDNDPNFFTRLKGRGIWPQLIRQRVKRAARAHGMDRSFPQLRSDLFRPPERDGQME
HHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEE
LF
CC
>Mature Secondary Structure
MKSSKPLPPIAGRGAPTNLRPTRTGSAERVPDGDWLDAAADVDGEAPRLRTTVTVEHPKT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEECCCE
IITRNKSPDIGFDRSINPYRGCEHGCIYCFARPTHAFHDLSPGLDFESRLFAKPNAAALL
EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCHHHHHCCCCCHHHHH
RAELAKPNYQVAPLAIGTNTDGYQPIEREWGITRSIVEVLAETRHPLLITTKSDRLLRDI
HHHHCCCCCEEEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH
DLLADMARDNLVGVAISVTTLDPKVARTLEPRVPHPKRRLAAIRKLVDAGVPTQVNISPI
HHHHHHHHCCEEEEEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
IPAITDQEIEAIMGAAAEAGAIRASYILMRLPYEVAPLFRAWLDAHYPDRAAKVMHIVQD
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IRDGRDNDPNFFTRLKGRGIWPQLIRQRVKRAARAHGMDRSFPQLRSDLFRPPERDGQME
HHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEE
LF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]