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The map label for this gene is csgA [H]

Identifier: 103486653

GI number: 103486653

Start: 1199164

End: 1199889

Strand: Reverse

Name: csgA [H]

Synonym: Sala_1165

Alternate gene names: 103486653

Gene position: 1199889-1199164 (Counterclockwise)

Preceding gene: 103486657

Following gene: 103486652

Centisome position: 35.87

GC content: 69.56

Gene sequence:

>726_bases
ATGATAGGCGTGGCGCCCATGACGGACCCGGAATCGGCGGTGGTGATCGGCGCAGCGGGCGGCATCGGCGCGGCCTTGGC
CGATGCTCTTGCGGCCGATGGTCGCCATGACGTCATCCACCGCCTTGCGCGGTCGGCGCCGGCCCCGTTTGCAATCGACA
TTACCGACGCGGATTCGGTGGCCGCGGCGGCGGCGATGGTCGCCGCCGGTGGCCCGCCGCCCCGGCTGGTCATCGTCGCG
ACGGGCTTGCTCCACGCCGACGGCCATCGGCCCGAACGCGGCCTGTCCGACATCGATCCCGACTGGATGGCGCGAAGTTT
CGCCGTCAATACGATCGGGCCCGCGCTGGTCGCCAGGCATTTCCTGCCGCTGTTGCCGCGCCGCGGGCGCACGATTTTCA
CTGCGTTGTCGGCACGGGTCGGCAGCATCGCCGACAACCGCACCGGCGGCTGGTTCAGTTATCGCGCGTCGAAAGCCGCG
CTCAATCAGCTCGTCCGCAGCTTCGCCATCGCCGAGACGCGCCGCAATCCAGAGGCGGTGGTCGTCGCCTTGCATCCCGG
CACGGTCGATACGGCGATGTCGCGGCCGTTTCAGCGCGCGGTAGCGCCGGGGACGCTCGTGACGCCGCCCATCGCTGCGG
CCAATCTGCTGCGCACGATCGATGCGCTGACGCCTGCCCAAACGGGCCGGATTTTCGCGTGGGACGGCAGCGAAATCATT
CCCTGA

Upstream 100 bases:

>100_bases
AGGGCCATGGGCAGGCAGTGGGAAGCAGGCGATGCACGGTTCAACCTAATATGGCGGCTCGCGGCTTTGGCAAGCATCGC
TTGTTCCTGCCCGGCTGCGC

Downstream 100 bases:

>100_bases
AAATCGCCCGAATCACTGGCAATTCGCCGCGCCTTGGGCTAGGCCAAATCCATCTCCCGATAAGCAGAAAAAAGGCCGGG
TCTTGACCGAAGAAAATACG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MIGVAPMTDPESAVVIGAAGGIGAALADALAADGRHDVIHRLARSAPAPFAIDITDADSVAAAAAMVAAGGPPPRLVIVA
TGLLHADGHRPERGLSDIDPDWMARSFAVNTIGPALVARHFLPLLPRRGRTIFTALSARVGSIADNRTGGWFSYRASKAA
LNQLVRSFAIAETRRNPEAVVVALHPGTVDTAMSRPFQRAVAPGTLVTPPIAAANLLRTIDALTPAQTGRIFAWDGSEII
P

Sequences:

>Translated_241_residues
MIGVAPMTDPESAVVIGAAGGIGAALADALAADGRHDVIHRLARSAPAPFAIDITDADSVAAAAAMVAAGGPPPRLVIVA
TGLLHADGHRPERGLSDIDPDWMARSFAVNTIGPALVARHFLPLLPRRGRTIFTALSARVGSIADNRTGGWFSYRASKAA
LNQLVRSFAIAETRRNPEAVVVALHPGTVDTAMSRPFQRAVAPGTLVTPPIAAANLLRTIDALTPAQTGRIFAWDGSEII
P
>Mature_241_residues
MIGVAPMTDPESAVVIGAAGGIGAALADALAADGRHDVIHRLARSAPAPFAIDITDADSVAAAAAMVAAGGPPPRLVIVA
TGLLHADGHRPERGLSDIDPDWMARSFAVNTIGPALVARHFLPLLPRRGRTIFTALSARVGSIADNRTGGWFSYRASKAA
LNQLVRSFAIAETRRNPEAVVVALHPGTVDTAMSRPFQRAVAPGTLVTPPIAAANLLRTIDALTPAQTGRIFAWDGSEII
P

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: NA

Molecular weight: Translated: 24975; Mature: 24975

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGVAPMTDPESAVVIGAAGGIGAALADALAADGRHDVIHRLARSAPAPFAIDITDADSV
CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCHHH
AAAAAMVAAGGPPPRLVIVATGLLHADGHRPERGLSDIDPDWMARSFAVNTIGPALVARH
HHHHHHHHCCCCCCEEEEEEECEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FLPLLPRRGRTIFTALSARVGSIADNRTGGWFSYRASKAALNQLVRSFAIAETRRNPEAV
HHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEE
VVALHPGTVDTAMSRPFQRAVAPGTLVTPPIAAANLLRTIDALTPAQTGRIFAWDGSEII
EEEECCCCHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
P
C
>Mature Secondary Structure
MIGVAPMTDPESAVVIGAAGGIGAALADALAADGRHDVIHRLARSAPAPFAIDITDADSV
CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCHHH
AAAAAMVAAGGPPPRLVIVATGLLHADGHRPERGLSDIDPDWMARSFAVNTIGPALVARH
HHHHHHHHCCCCCCEEEEEEECEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FLPLLPRRGRTIFTALSARVGSIADNRTGGWFSYRASKAALNQLVRSFAIAETRRNPEAV
HHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEE
VVALHPGTVDTAMSRPFQRAVAPGTLVTPPIAAANLLRTIDALTPAQTGRIFAWDGSEII
EEEECCCCHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]