| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is bcp [H]
Identifier: 103486650
GI number: 103486650
Start: 1195428
End: 1196015
Strand: Direct
Name: bcp [H]
Synonym: Sala_1162
Alternate gene names: 103486650
Gene position: 1195428-1196015 (Clockwise)
Preceding gene: 103486648
Following gene: 103486654
Centisome position: 35.74
GC content: 66.33
Gene sequence:
>588_bases ATGGAGGATTGCCCGATGAGATTGCTCAAAAGCGTCATGATCCCGCTGGGGCTTGCGCTTGGCCTTGGCGCTGCGCTCGC GCTCGTCCCGGCACCGGGAATCGCCGCGCTTCAGCAAGGTGCGAAGGCGCCCGATTTCACGCTCAGCGCCGCGCAGGGCG GCAAGCCGTTCAGCCTGTCGCTGAAAGAGGCGCTGAAGAAGGGGCCGGTCGTGCTCTATTTCTTCCCTGCCGCCTTCACG CCGGGATGCACGCTGGAGGCGCATCTGTTTGCCGAAGCGAGCGACGATTTCAACCGGCTGGGCGCGCGGGTGGTCGGGGT AACGGCGGGCAATATCGAGCGCGTCGCCGAGTTTTCGCGCTCCGAATGCCGCGACAGGTTCGCGGTGGCGGCCGACCCCG GCGCGAAGGTGGCGGCGAAATATGACGCGACGATGCGGCGCCCCGACGGAACCATCCTGTCCAACCGGACATCGTTCGTC ATTGCGCCGGACGGGACCATCCTGATGAGCTATACCGACGCCAAGCCGCAGGCGCATGTCGAAAAGACAATGGCGGCGGT GCGCGCGTGGAGGGCGAAGCGGCGGTAG
Upstream 100 bases:
>100_bases ATGATGGCGAGAGTCATGACGCCATGCTGCGCCGGTTGATCGGTGCGGTCAATCGCTCTGGACGCGGCCGCCTTTTTTCC GCATCCTCGGTCGGGATCGC
Downstream 100 bases:
>100_bases GAGGCCGGGATATGCCGCCCGTGCGGCGCGGTCAGCCGCGTTGTTGCAGGCTCACCACCGCCTCGATCGGCAGTTCGGCG TAGATGTGCGGGAAGAGCTC
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Bacterioferritin comigratory protein homolog; Thioredoxin reductase [H]
Number of amino acids: Translated: 195; Mature: 195
Protein sequence:
>195_residues MEDCPMRLLKSVMIPLGLALGLGAALALVPAPGIAALQQGAKAPDFTLSAAQGGKPFSLSLKEALKKGPVVLYFFPAAFT PGCTLEAHLFAEASDDFNRLGARVVGVTAGNIERVAEFSRSECRDRFAVAADPGAKVAAKYDATMRRPDGTILSNRTSFV IAPDGTILMSYTDAKPQAHVEKTMAAVRAWRAKRR
Sequences:
>Translated_195_residues MEDCPMRLLKSVMIPLGLALGLGAALALVPAPGIAALQQGAKAPDFTLSAAQGGKPFSLSLKEALKKGPVVLYFFPAAFT PGCTLEAHLFAEASDDFNRLGARVVGVTAGNIERVAEFSRSECRDRFAVAADPGAKVAAKYDATMRRPDGTILSNRTSFV IAPDGTILMSYTDAKPQAHVEKTMAAVRAWRAKRR >Mature_195_residues MEDCPMRLLKSVMIPLGLALGLGAALALVPAPGIAALQQGAKAPDFTLSAAQGGKPFSLSLKEALKKGPVVLYFFPAAFT PGCTLEAHLFAEASDDFNRLGARVVGVTAGNIERVAEFSRSECRDRFAVAADPGAKVAAKYDATMRRPDGTILSNRTSFV IAPDGTILMSYTDAKPQAHVEKTMAAVRAWRAKRR
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
None
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 20706; Mature: 20706
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDCPMRLLKSVMIPLGLALGLGAALALVPAPGIAALQQGAKAPDFTLSAAQGGKPFSLS CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEECCCCCCCEEEC LKEALKKGPVVLYFFPAAFTPGCTLEAHLFAEASDDFNRLGARVVGVTAGNIERVAEFSR HHHHHHHCCEEEEEECCCCCCCCEEEEEEEECCCCHHHHHCCEEEEEECCCHHHHHHHHH SECRDRFAVAADPGAKVAAKYDATMRRPDGTILSNRTSFVIAPDGTILMSYTDAKPQAHV HHHHHHEEEECCCCCCEEEECCCCEECCCCCEEECCCEEEECCCCEEEEEECCCCCHHHH EKTMAAVRAWRAKRR HHHHHHHHHHHHCCC >Mature Secondary Structure MEDCPMRLLKSVMIPLGLALGLGAALALVPAPGIAALQQGAKAPDFTLSAAQGGKPFSLS CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEECCCCCCCEEEC LKEALKKGPVVLYFFPAAFTPGCTLEAHLFAEASDDFNRLGARVVGVTAGNIERVAEFSR HHHHHHHCCEEEEEECCCCCCCCEEEEEEEECCCCHHHHHCCEEEEEECCCHHHHHHHHH SECRDRFAVAADPGAKVAAKYDATMRRPDGTILSNRTSFVIAPDGTILMSYTDAKPQAHV HHHHHHEEEECCCCCCEEEECCCCEECCCCCEEECCCEEEECCCCEEEEEECCCCCHHHH EKTMAAVRAWRAKRR HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]