Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486654

Identifier: 103486654

GI number: 103486654

Start: 1199913

End: 1201196

Strand: Direct

Name: 103486654

Synonym: Sala_1166

Alternate gene names: NA

Gene position: 1199913-1201196 (Clockwise)

Preceding gene: 103486650

Following gene: 103486655

Centisome position: 35.87

GC content: 70.48

Gene sequence:

>1284_bases
ATGCTTGCCAAAGCCGCGAGCCGCCATATTAGGTTGAACCGTGCATCGCCTGCTTCCCACTGCCTGCCCATGGCCCTGAT
CGCGCTCGTTGGCGCCAGCGAGACCCTGCCCGATGGGGGATTGCGCGCGCTCGTCACCGTGGCGGGCGAAACGCTGATCG
AGCGGCAGGCGGCGCGTCTGGCGGATGTCGGGGTGACGCACATCGCCGTCGCGGTCGCCGCGCTGCCCGCCGATCTGCTC
GCCGTGTGCGACCGCATTCGCCGCCGCGGGGTGAAGGTGACTCCGGTGCGCTCGGCAAGCGATCTTGTGCCGCTGATCGA
GGATGACGACCGCCTGATCCTCGTCGCCGACGGCCTGCGCGCCGGGGGAACGCACTATGCCGCAATTGCAAGGCCGGGAT
CGCCGGCGATCCTCGTGACCGGCGACACGGTGCTGACCCAGGGGTTCGAGCGGATCGACGCGACGCGGCGCTGGGGCGGG
CTTGCCTCGGTAGCGCCGCCGATGGTTGCCGAGCTCGCCGCGATGCCGGGCGAATGGGACATGATGCTGACGCTGCTGCG
CCTCGCCGTGCAATCGGGCGCACGGCGGCTTTACTGCGAACCCGCGCTGTTCGAGCAGGGCGAGATTGCGATCGTGTCCG
ACCGTCCGACCGCGGCGCTGATCGAGCAATCGAGCCTGCAACGGGTCGAATATGGCGGCATGGGGCTGGGGCGCTCGGCG
ATCATGATGCCGCTGGTACGGCTGGCGGGTCCGCTGCTCGTCAAGTCGCCGAATACCGCGCGTTACCTGCCCCCTGTCAC
GGCGTTGCTGTGGGTTGCCGTCGCCGCGCTGACGGCAAGCGGGCTGGCGGCGGCCGGAGCACTCGTCGCGGTGCTGGGCG
GGCTTGGGCTCGCCGCGATGCGTTTCCTGTCGGCCTTTCGCGCCGAAAGCGCGGCGCCGGACCGGGCGCGGGCGGTCATT
CGCAGTTTCGCGCTCGCCTTGCTTGCCCTCTTCCCGTGGCTGCTGGCGTTCGGCGCGCCGGGCCGCACAATGCCGCCCTT
TACCGAAGCGGCGCTGGCGCCGTGCCTCGCGGCGACGATCGTGCTGGCGCGCGCGCTTTACGAGGATGCGGGCGAACGGC
GGCGGTTCCACTGGCTGCTCCCCGACGCCGATCAGGCATGGATCATGCTCGCGCCTGCGCTGCTGTTCGGCGCCGCGTCG
CTGATGTTCGCGGTGCTGCCCCTGCTCGCGCTGTTCCAGATCCTGCTCTGGCTGCACCTCGCGCGGCGTCCGGATGCTCG
CTAA

Upstream 100 bases:

>100_bases
AAGGCCGCGCCGATGCCGCCCGCTGCGCCGATCACCACCGCCGATTCCGGGTCCGTCATGGGCGCCACGCCTATCATGCG
CAGCCGGGCAGGAACAAGCG

Downstream 100 bases:

>100_bases
ATCAGGCTCCTTCAAGGTTTAAGGCCTATTAACGCCAAGCTGCTATTGGCGGGTGCGCATGAGTGACTCGCTCTCCTTTC
CCGGCATCGAACCGCCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MLAKAASRHIRLNRASPASHCLPMALIALVGASETLPDGGLRALVTVAGETLIERQAARLADVGVTHIAVAVAALPADLL
AVCDRIRRRGVKVTPVRSASDLVPLIEDDDRLILVADGLRAGGTHYAAIARPGSPAILVTGDTVLTQGFERIDATRRWGG
LASVAPPMVAELAAMPGEWDMMLTLLRLAVQSGARRLYCEPALFEQGEIAIVSDRPTAALIEQSSLQRVEYGGMGLGRSA
IMMPLVRLAGPLLVKSPNTARYLPPVTALLWVAVAALTASGLAAAGALVAVLGGLGLAAMRFLSAFRAESAAPDRARAVI
RSFALALLALFPWLLAFGAPGRTMPPFTEAALAPCLAATIVLARALYEDAGERRRFHWLLPDADQAWIMLAPALLFGAAS
LMFAVLPLLALFQILLWLHLARRPDAR

Sequences:

>Translated_427_residues
MLAKAASRHIRLNRASPASHCLPMALIALVGASETLPDGGLRALVTVAGETLIERQAARLADVGVTHIAVAVAALPADLL
AVCDRIRRRGVKVTPVRSASDLVPLIEDDDRLILVADGLRAGGTHYAAIARPGSPAILVTGDTVLTQGFERIDATRRWGG
LASVAPPMVAELAAMPGEWDMMLTLLRLAVQSGARRLYCEPALFEQGEIAIVSDRPTAALIEQSSLQRVEYGGMGLGRSA
IMMPLVRLAGPLLVKSPNTARYLPPVTALLWVAVAALTASGLAAAGALVAVLGGLGLAAMRFLSAFRAESAAPDRARAVI
RSFALALLALFPWLLAFGAPGRTMPPFTEAALAPCLAATIVLARALYEDAGERRRFHWLLPDADQAWIMLAPALLFGAAS
LMFAVLPLLALFQILLWLHLARRPDAR
>Mature_427_residues
MLAKAASRHIRLNRASPASHCLPMALIALVGASETLPDGGLRALVTVAGETLIERQAARLADVGVTHIAVAVAALPADLL
AVCDRIRRRGVKVTPVRSASDLVPLIEDDDRLILVADGLRAGGTHYAAIARPGSPAILVTGDTVLTQGFERIDATRRWGG
LASVAPPMVAELAAMPGEWDMMLTLLRLAVQSGARRLYCEPALFEQGEIAIVSDRPTAALIEQSSLQRVEYGGMGLGRSA
IMMPLVRLAGPLLVKSPNTARYLPPVTALLWVAVAALTASGLAAAGALVAVLGGLGLAAMRFLSAFRAESAAPDRARAVI
RSFALALLALFPWLLAFGAPGRTMPPFTEAALAPCLAATIVLARALYEDAGERRRFHWLLPDADQAWIMLAPALLFGAAS
LMFAVLPLLALFQILLWLHLARRPDAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45165; Mature: 45165

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAKAASRHIRLNRASPASHCLPMALIALVGASETLPDGGLRALVTVAGETLIERQAARL
CCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ADVGVTHIAVAVAALPADLLAVCDRIRRRGVKVTPVRSASDLVPLIEDDDRLILVADGLR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHCCCCCEECCCCEEEEECCCC
AGGTHYAAIARPGSPAILVTGDTVLTQGFERIDATRRWGGLASVAPPMVAELAAMPGEWD
CCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHCCCCHH
MMLTLLRLAVQSGARRLYCEPALFEQGEIAIVSDRPTAALIEQSSLQRVEYGGMGLGRSA
HHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHH
IMMPLVRLAGPLLVKSPNTARYLPPVTALLWVAVAALTASGLAAAGALVAVLGGLGLAAM
HHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFLSAFRAESAAPDRARAVIRSFALALLALFPWLLAFGAPGRTMPPFTEAALAPCLAATI
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VLARALYEDAGERRRFHWLLPDADQAWIMLAPALLFGAASLMFAVLPLLALFQILLWLHL
HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARRPDAR
HCCCCCC
>Mature Secondary Structure
MLAKAASRHIRLNRASPASHCLPMALIALVGASETLPDGGLRALVTVAGETLIERQAARL
CCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ADVGVTHIAVAVAALPADLLAVCDRIRRRGVKVTPVRSASDLVPLIEDDDRLILVADGLR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHCCCCCEECCCCEEEEECCCC
AGGTHYAAIARPGSPAILVTGDTVLTQGFERIDATRRWGGLASVAPPMVAELAAMPGEWD
CCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHCCCCHH
MMLTLLRLAVQSGARRLYCEPALFEQGEIAIVSDRPTAALIEQSSLQRVEYGGMGLGRSA
HHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHH
IMMPLVRLAGPLLVKSPNTARYLPPVTALLWVAVAALTASGLAAAGALVAVLGGLGLAAM
HHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFLSAFRAESAAPDRARAVIRSFALALLALFPWLLAFGAPGRTMPPFTEAALAPCLAATI
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VLARALYEDAGERRRFHWLLPDADQAWIMLAPALLFGAASLMFAVLPLLALFQILLWLHL
HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARRPDAR
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA