| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is pgsA [H]
Identifier: 103486642
GI number: 103486642
Start: 1189458
End: 1190045
Strand: Direct
Name: pgsA [H]
Synonym: Sala_1154
Alternate gene names: 103486642
Gene position: 1189458-1190045 (Clockwise)
Preceding gene: 103486640
Following gene: 103486643
Centisome position: 35.56
GC content: 62.41
Gene sequence:
>588_bases ATGTCGACGGGGATCATGCTGAGCCTTCCGAACATTTTGACGCTGTCGCGAATCCTGGCGGTGCCCATCCTGCTCTTCCT GCTGTGGCCGGGCGTGACCGAAGGGTCGCACCAGCCCAGGCCGATCGATTATGCACTGGCGTTCGGCCTCTATTGCCTGA TGGGCATTACCGATTATTTCGACGGCTATGTCGCCCGTGCGCGCGGCACCGTGTCGCGGCTGGGCATCTTTCTTGACCCC ATCGCCGACAAGATCATGATCGCGGCGGTGATCCTGCTGCTCGTCTTCACGCGCGACATCGACGGGTGGCACGTCATCGC CGCGCTTGTCATCCTGCTGCGCGAAATCATCGTGTCGGGGCTGCGCGAGTTTCTTGCGACCTTGCAGGTGTCGATGCCGG TGACGCAGCTTGCCAAATGGAAAACGACCTTCCAGCTTGTCGCCTTTGGCGCGCTGATCCTTGCGGGGGCGCTGCCCGCA ATGGCGTGGATCAAGACGGTCGGGCTGGCGTCGTTGTGGGGGGCGGCGGTGCTGACGCTGGTAACCGGCTGGGATTATCT GCGCGTCGGCCTGAAGCATATGGACTGA
Upstream 100 bases:
>100_bases TTCAACTATGTCGGTTCGCACGCATTTCGCGGGCAACAGGTTGTCGCCGGGGGGGCTTATCGGCTAGGGCGGTCGGGGTC AAAGGTCATTTTGACCGGCC
Downstream 100 bases:
>100_bases TGCGGCTCGATCTCGCCTATTTCGCCTGGGTGCGCGAGCGGATGGGGATGGCGGGCGAGACGGTCGAACTGCCGCCCGGA ATCGCCGATGTCGCGGCGCT
Product: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Products: NA
Alternate protein names: Phosphatidylglycerophosphate synthase; PGP synthase [H]
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MSTGIMLSLPNILTLSRILAVPILLFLLWPGVTEGSHQPRPIDYALAFGLYCLMGITDYFDGYVARARGTVSRLGIFLDP IADKIMIAAVILLLVFTRDIDGWHVIAALVILLREIIVSGLREFLATLQVSMPVTQLAKWKTTFQLVAFGALILAGALPA MAWIKTVGLASLWGAAVLTLVTGWDYLRVGLKHMD
Sequences:
>Translated_195_residues MSTGIMLSLPNILTLSRILAVPILLFLLWPGVTEGSHQPRPIDYALAFGLYCLMGITDYFDGYVARARGTVSRLGIFLDP IADKIMIAAVILLLVFTRDIDGWHVIAALVILLREIIVSGLREFLATLQVSMPVTQLAKWKTTFQLVAFGALILAGALPA MAWIKTVGLASLWGAAVLTLVTGWDYLRVGLKHMD >Mature_194_residues STGIMLSLPNILTLSRILAVPILLFLLWPGVTEGSHQPRPIDYALAFGLYCLMGITDYFDGYVARARGTVSRLGIFLDPI ADKIMIAAVILLLVFTRDIDGWHVIAALVILLREIIVSGLREFLATLQVSMPVTQLAKWKTTFQLVAFGALILAGALPAM AWIKTVGLASLWGAAVLTLVTGWDYLRVGLKHMD
Specific function: This protein catalyzes the committed step to the synthesis of the acidic phospholipids [H]
COG id: COG0558
COG function: function code I; Phosphatidylglycerophosphate synthase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDP-alcohol phosphatidyltransferase class-I family [H]
Homologues:
Organism=Escherichia coli, GI1788220, Length=185, Percent_Identity=34.5945945945946, Blast_Score=97, Evalue=8e-22, Organism=Saccharomyces cerevisiae, GI6320059, Length=172, Percent_Identity=31.9767441860465, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000462 - InterPro: IPR004570 [H]
Pfam domain/function: PF01066 CDP-OH_P_transf [H]
EC number: =2.7.8.5 [H]
Molecular weight: Translated: 21322; Mature: 21191
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTGIMLSLPNILTLSRILAVPILLFLLWPGVTEGSHQPRPIDYALAFGLYCLMGITDYF CCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH DGYVARARGTVSRLGIFLDPIADKIMIAAVILLLVFTRDIDGWHVIAALVILLREIIVSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LREFLATLQVSMPVTQLAKWKTTFQLVAFGALILAGALPAMAWIKTVGLASLWGAAVLTL HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTGWDYLRVGLKHMD HHHHHHHHHHHHHCC >Mature Secondary Structure STGIMLSLPNILTLSRILAVPILLFLLWPGVTEGSHQPRPIDYALAFGLYCLMGITDYF CCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH DGYVARARGTVSRLGIFLDPIADKIMIAAVILLLVFTRDIDGWHVIAALVILLREIIVSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LREFLATLQVSMPVTQLAKWKTTFQLVAFGALILAGALPAMAWIKTVGLASLWGAAVLTL HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTGWDYLRVGLKHMD HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA