Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486640

Identifier: 103486640

GI number: 103486640

Start: 1187645

End: 1187869

Strand: Direct

Name: 103486640

Synonym: Sala_1152

Alternate gene names: NA

Gene position: 1187645-1187869 (Clockwise)

Preceding gene: 103486639

Following gene: 103486642

Centisome position: 35.5

GC content: 61.78

Gene sequence:

>225_bases
ATGGACTCGAACGACCATATCGATATCCGCGGTCGCGTGCGGGCGCATGGCGTCCGGCAGCTGACGATTGCGCGGATGAA
CGCACCGGCGGACTGGCAGGACGAACTGCGCCGCGCGCTCGTCGCGCACCGCAAGCCCGCCACGATCCTTTCGAGCAACG
ACTTTCGGCTGTTCCTTCAGAGCTTCGCGATATTTTTCACCGCGACGATGCTTTTCGTCATGTGA

Upstream 100 bases:

>100_bases
CCGGCGCTGAACGCGCAGAAACGTCCCGCTTCGGGACGGCGCGGCCGTTAACGCTCTTTTAACCTTATCGACTCGTTAAG
ATCGTCCTAGCTTCGGGCGC

Downstream 100 bases:

>100_bases
GGATTGGACTCGGGCGGCGGATTTGCTCCCCGCCCCGATCCGCCCAGAGCGGCGTGCCGTATATCTGATCCACCGGGAAG
GAGCCGATTTGGCCCAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MDSNDHIDIRGRVRAHGVRQLTIARMNAPADWQDELRRALVAHRKPATILSSNDFRLFLQSFAIFFTATMLFVM

Sequences:

>Translated_74_residues
MDSNDHIDIRGRVRAHGVRQLTIARMNAPADWQDELRRALVAHRKPATILSSNDFRLFLQSFAIFFTATMLFVM
>Mature_74_residues
MDSNDHIDIRGRVRAHGVRQLTIARMNAPADWQDELRRALVAHRKPATILSSNDFRLFLQSFAIFFTATMLFVM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8559; Mature: 8559

Theoretical pI: Translated: 11.65; Mature: 11.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSNDHIDIRGRVRAHGVRQLTIARMNAPADWQDELRRALVAHRKPATILSSNDFRLFLQ
CCCCCCEEEECCCCCCCHHEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHH
SFAIFFTATMLFVM
HHHHHHHHHHHHHC
>Mature Secondary Structure
MDSNDHIDIRGRVRAHGVRQLTIARMNAPADWQDELRRALVAHRKPATILSSNDFRLFLQ
CCCCCCEEEECCCCCCCHHEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHH
SFAIFFTATMLFVM
HHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA