Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486637

Identifier: 103486637

GI number: 103486637

Start: 1184498

End: 1185634

Strand: Reverse

Name: 103486637

Synonym: Sala_1149

Alternate gene names: NA

Gene position: 1185634-1184498 (Counterclockwise)

Preceding gene: 103486641

Following gene: 103486635

Centisome position: 35.44

GC content: 68.43

Gene sequence:

>1137_bases
ATGCAGTCCCCCATTTGCGCGATGCTCGGCATCGAATTCCCGCTGCTCGCCTTTTCGCACTGCCGCGACGTCGTCGTCGC
GGTGTCGAAAGCGGGTGGCATGGGCGTGTTCGGCGCGGCTGCGCTGCCGCCCGAACGGCTGGAAGAAGAGCTGGCGTGGA
TCGACGCGCATATCGGCGGCCGCCCCTATGGCGTCGACCTGATCGTCCCCAACAGCTTTGCGGGCAAGGGCGAAGCAGCC
TCGTCCGGCGCCGCGCAGATTCCCGAATCCCACCTGAAGTTCGCCGCCGATCTGCTCGGAAGGTTCGATGTCGATGCGAG
CGGCCTCGAGACTGCGATGGAAGCGCGGCAGAGCTTTGGCGACAATATGCACGAAGAAGGCGCCGCAAGGCTGCTCGAGG
TCGCTTTCCGCCATCCGATCAAGCTGATCGCCAATGCGCTGGGCGTCCCGCCGCCGCTGATGCTCGAACTCGGCAAGCGC
CACAACGTCCCGGTCGCCGCGCTTGTCGGCACGCGCGACCATGCGCTGGCGCAGGTGCGCGCGGGGGTGGACATCCTTGT
CGTCGCGGGCGGCGAAGCGGGCGGCCATTGCGGCGAGGTCGCGACGATGGTGCTCGTGCCCGAAGTCGCAGCGGCGCTCG
ACGCGATCGGCGACACGACGCCGATTCTCGCGGCGGGCGGCATCGTCACCGGGCGCCAGATGGCGGCGGCGATGGCGATG
GGCGCCCACGGCGCGTGGACCGGATCGGTCTGGCTGACGACCGCCGAAGCCGAGACCAACCCGGTGGTGAAGGAAAAGCT
GCTCGCCGCCTCGGCGCGCGACACGGTGCGCTCGAAGAGCCGTACCGGCAAGCCCTCGCGCCAGCTCCGCTCGCCGTGGA
CCGATGCGTGGGAAGCCGAAGGCGCGCCGAAACCGCTGCCGATGCCGCTCCAGTCGCTGGTCAGCGAACCCGCGCTGCGC
AAGGTCGACAAGCTGGCGGAAGGCGGCCACGAGGGTGCAAAAGCACTCGCCACCTATTGGGTCGGCCAGGGTGTCGGGCT
GATGAACGAGGCAATGGGCGCCGGACAGGTCGTGCAGGCGTTCAAGCAGGACTGGATCGTCGCGTGCGAGCGGCTGAACG
GGTTTTTGGAAGAATAG

Upstream 100 bases:

>100_bases
GGCCCGATATCTTCGCCATTTCGACGCCTCGAACGGGGAATTAATGGGTCCTGACCCTATAGCGCTGTCATAGGTCGCCT
AAAGAAACGGAGAGGTTCCC

Downstream 100 bases:

>100_bases
AAAAGCAAACCCCTCCCCCTTTATGGGGGAGGCAGCGAGACTCGCCAGCTTGCTGGCTAGTCACAGCGGAGGGGGTGCGC
TCTCGGCCTGAAACGGCCCG

Product: 2-nitropropane dioxygenase, NPD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGGRPYGVDLIVPNSFAGKGEAA
SSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFGDNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKR
HNVPVAALVGTRDHALAQVRAGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM
GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAEGAPKPLPMPLQSLVSEPALR
KVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQAFKQDWIVACERLNGFLEE

Sequences:

>Translated_378_residues
MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGGRPYGVDLIVPNSFAGKGEAA
SSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFGDNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKR
HNVPVAALVGTRDHALAQVRAGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM
GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAEGAPKPLPMPLQSLVSEPALR
KVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQAFKQDWIVACERLNGFLEE
>Mature_378_residues
MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGGRPYGVDLIVPNSFAGKGEAA
SSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFGDNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKR
HNVPVAALVGTRDHALAQVRAGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM
GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAEGAPKPLPMPLQSLVSEPALR
KVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQAFKQDWIVACERLNGFLEE

Specific function: Unknown

COG id: COG2070

COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitronate monooxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004136
- InterPro:   IPR013785 [H]

Pfam domain/function: PF03060 NPD [H]

EC number: NA

Molecular weight: Translated: 39459; Mature: 39459

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGG
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
RPYGVDLIVPNSFAGKGEAASSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFG
CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
DNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKRHNVPVAALVGTRDHALAQVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHH
AGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHH
GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAE
CCCCCEECEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC
GAPKPLPMPLQSLVSEPALRKVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQA
CCCCCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHH
FKQDWIVACERLNGFLEE
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGG
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
RPYGVDLIVPNSFAGKGEAASSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFG
CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
DNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKRHNVPVAALVGTRDHALAQVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHH
AGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHH
GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAE
CCCCCEECEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC
GAPKPLPMPLQSLVSEPALRKVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQA
CCCCCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHH
FKQDWIVACERLNGFLEE
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230 [H]