| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486637
Identifier: 103486637
GI number: 103486637
Start: 1184498
End: 1185634
Strand: Reverse
Name: 103486637
Synonym: Sala_1149
Alternate gene names: NA
Gene position: 1185634-1184498 (Counterclockwise)
Preceding gene: 103486641
Following gene: 103486635
Centisome position: 35.44
GC content: 68.43
Gene sequence:
>1137_bases ATGCAGTCCCCCATTTGCGCGATGCTCGGCATCGAATTCCCGCTGCTCGCCTTTTCGCACTGCCGCGACGTCGTCGTCGC GGTGTCGAAAGCGGGTGGCATGGGCGTGTTCGGCGCGGCTGCGCTGCCGCCCGAACGGCTGGAAGAAGAGCTGGCGTGGA TCGACGCGCATATCGGCGGCCGCCCCTATGGCGTCGACCTGATCGTCCCCAACAGCTTTGCGGGCAAGGGCGAAGCAGCC TCGTCCGGCGCCGCGCAGATTCCCGAATCCCACCTGAAGTTCGCCGCCGATCTGCTCGGAAGGTTCGATGTCGATGCGAG CGGCCTCGAGACTGCGATGGAAGCGCGGCAGAGCTTTGGCGACAATATGCACGAAGAAGGCGCCGCAAGGCTGCTCGAGG TCGCTTTCCGCCATCCGATCAAGCTGATCGCCAATGCGCTGGGCGTCCCGCCGCCGCTGATGCTCGAACTCGGCAAGCGC CACAACGTCCCGGTCGCCGCGCTTGTCGGCACGCGCGACCATGCGCTGGCGCAGGTGCGCGCGGGGGTGGACATCCTTGT CGTCGCGGGCGGCGAAGCGGGCGGCCATTGCGGCGAGGTCGCGACGATGGTGCTCGTGCCCGAAGTCGCAGCGGCGCTCG ACGCGATCGGCGACACGACGCCGATTCTCGCGGCGGGCGGCATCGTCACCGGGCGCCAGATGGCGGCGGCGATGGCGATG GGCGCCCACGGCGCGTGGACCGGATCGGTCTGGCTGACGACCGCCGAAGCCGAGACCAACCCGGTGGTGAAGGAAAAGCT GCTCGCCGCCTCGGCGCGCGACACGGTGCGCTCGAAGAGCCGTACCGGCAAGCCCTCGCGCCAGCTCCGCTCGCCGTGGA CCGATGCGTGGGAAGCCGAAGGCGCGCCGAAACCGCTGCCGATGCCGCTCCAGTCGCTGGTCAGCGAACCCGCGCTGCGC AAGGTCGACAAGCTGGCGGAAGGCGGCCACGAGGGTGCAAAAGCACTCGCCACCTATTGGGTCGGCCAGGGTGTCGGGCT GATGAACGAGGCAATGGGCGCCGGACAGGTCGTGCAGGCGTTCAAGCAGGACTGGATCGTCGCGTGCGAGCGGCTGAACG GGTTTTTGGAAGAATAG
Upstream 100 bases:
>100_bases GGCCCGATATCTTCGCCATTTCGACGCCTCGAACGGGGAATTAATGGGTCCTGACCCTATAGCGCTGTCATAGGTCGCCT AAAGAAACGGAGAGGTTCCC
Downstream 100 bases:
>100_bases AAAAGCAAACCCCTCCCCCTTTATGGGGGAGGCAGCGAGACTCGCCAGCTTGCTGGCTAGTCACAGCGGAGGGGGTGCGC TCTCGGCCTGAAACGGCCCG
Product: 2-nitropropane dioxygenase, NPD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGGRPYGVDLIVPNSFAGKGEAA SSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFGDNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKR HNVPVAALVGTRDHALAQVRAGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAEGAPKPLPMPLQSLVSEPALR KVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQAFKQDWIVACERLNGFLEE
Sequences:
>Translated_378_residues MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGGRPYGVDLIVPNSFAGKGEAA SSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFGDNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKR HNVPVAALVGTRDHALAQVRAGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAEGAPKPLPMPLQSLVSEPALR KVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQAFKQDWIVACERLNGFLEE >Mature_378_residues MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGGRPYGVDLIVPNSFAGKGEAA SSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFGDNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKR HNVPVAALVGTRDHALAQVRAGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAEGAPKPLPMPLQSLVSEPALR KVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQAFKQDWIVACERLNGFLEE
Specific function: Unknown
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: NA
Molecular weight: Translated: 39459; Mature: 39459
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGG CCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC RPYGVDLIVPNSFAGKGEAASSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFG CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC DNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKRHNVPVAALVGTRDHALAQVR CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHH AGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHH GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAE CCCCCEECEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC GAPKPLPMPLQSLVSEPALRKVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQA CCCCCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHH FKQDWIVACERLNGFLEE HHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQSPICAMLGIEFPLLAFSHCRDVVVAVSKAGGMGVFGAAALPPERLEEELAWIDAHIGG CCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC RPYGVDLIVPNSFAGKGEAASSGAAQIPESHLKFAADLLGRFDVDASGLETAMEARQSFG CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC DNMHEEGAARLLEVAFRHPIKLIANALGVPPPLMLELGKRHNVPVAALVGTRDHALAQVR CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHH AGVDILVVAGGEAGGHCGEVATMVLVPEVAAALDAIGDTTPILAAGGIVTGRQMAAAMAM CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHH GAHGAWTGSVWLTTAEAETNPVVKEKLLAASARDTVRSKSRTGKPSRQLRSPWTDAWEAE CCCCCEECEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC GAPKPLPMPLQSLVSEPALRKVDKLAEGGHEGAKALATYWVGQGVGLMNEAMGAGQVVQA CCCCCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHH FKQDWIVACERLNGFLEE HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]