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The map label for this gene is scpB [H]

Identifier: 103486630

GI number: 103486630

Start: 1179807

End: 1180400

Strand: Direct

Name: scpB [H]

Synonym: Sala_1142

Alternate gene names: 103486630

Gene position: 1179807-1180400 (Clockwise)

Preceding gene: 103486629

Following gene: 103486631

Centisome position: 35.27

GC content: 67.68

Gene sequence:

>594_bases
ATGATCGACGATCTGGAGCGCGCGATCGAAGCGATGCTCTTTGCCAGCGACGAGCCGCTCGACGCGCGGCAGCTTGCCGC
CCGCCTGGGCGATGACATGGCGCCGGGACAGGTGCGGGCGGTGATTGAGGCGATTGCGGCGCGCCATGCCGGGAGCGGCA
TCGAACTCGTCGAACGCGGCGGGCGCTGGCATTTCCAGACCCCCGCCGATCTGGCGCATCTGCTTCGCCGCGAACGCGAC
GACCCGCGCAAACTGTCGCGCGCCGCCGCCGAAGTGCTGGCGATCGTCGCCTACCACGAACCCGTCAGCCGCGCCGAGAT
CGAGGCGATCCGCGGCGTCCAGACGTCGAAGGGTACGCTCGACGTGCTGATGGAAGCCGAATGGATCGCGCCCGCGGGGC
GTCGCGAAGTGCCGGGACGCCCGCTCATCTACAAGACCACCGATACCTTCCTGCAGCATTTCGGCCTTAGCAGCCGCAAG
GATCTGCCCGGGATCGACGACCTGCGCGCGGCGGGGCTGCTCGATCCGGTCGATCTCGCTTTTGAAGCGGCGATGGGCGA
GCTGGACCTAGTAAAAGACGGCGAAGAGGCTTAG

Upstream 100 bases:

>100_bases
TCGTCGCGGCGCTCGAACTCGCGCGTCAGGGACGGGTCGAGTTGAAACAGGGCGGCGCGTTCGAACCGCTCTACCTGCGG
GCGGCAGGAGGAGGGGGGGC

Downstream 100 bases:

>100_bases
ATGAGCCCTTCAAGGAGAATATGAGATGGGTAGCTTCAGCATCTGGCACTGGCTCGTGGTCGGGATCCTCGTCCTGCTGC
TGTTCGGCAAGGGCCGTTTC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MIDDLERAIEAMLFASDEPLDARQLAARLGDDMAPGQVRAVIEAIAARHAGSGIELVERGGRWHFQTPADLAHLLRRERD
DPRKLSRAAAEVLAIVAYHEPVSRAEIEAIRGVQTSKGTLDVLMEAEWIAPAGRREVPGRPLIYKTTDTFLQHFGLSSRK
DLPGIDDLRAAGLLDPVDLAFEAAMGELDLVKDGEEA

Sequences:

>Translated_197_residues
MIDDLERAIEAMLFASDEPLDARQLAARLGDDMAPGQVRAVIEAIAARHAGSGIELVERGGRWHFQTPADLAHLLRRERD
DPRKLSRAAAEVLAIVAYHEPVSRAEIEAIRGVQTSKGTLDVLMEAEWIAPAGRREVPGRPLIYKTTDTFLQHFGLSSRK
DLPGIDDLRAAGLLDPVDLAFEAAMGELDLVKDGEEA
>Mature_197_residues
MIDDLERAIEAMLFASDEPLDARQLAARLGDDMAPGQVRAVIEAIAARHAGSGIELVERGGRWHFQTPADLAHLLRRERD
DPRKLSRAAAEVLAIVAYHEPVSRAEIEAIRGVQTSKGTLDVLMEAEWIAPAGRREVPGRPLIYKTTDTFLQHFGLSSRK
DLPGIDDLRAAGLLDPVDLAFEAAMGELDLVKDGEEA

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 21553; Mature: 21553

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDDLERAIEAMLFASDEPLDARQLAARLGDDMAPGQVRAVIEAIAARHAGSGIELVERG
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCC
GRWHFQTPADLAHLLRRERDDPRKLSRAAAEVLAIVAYHEPVSRAEIEAIRGVQTSKGTL
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHH
DVLMEAEWIAPAGRREVPGRPLIYKTTDTFLQHFGLSSRKDLPGIDDLRAAGLLDPVDLA
HHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHH
FEAAMGELDLVKDGEEA
HHHHHCCHHCCCCCCCC
>Mature Secondary Structure
MIDDLERAIEAMLFASDEPLDARQLAARLGDDMAPGQVRAVIEAIAARHAGSGIELVERG
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCC
GRWHFQTPADLAHLLRRERDDPRKLSRAAAEVLAIVAYHEPVSRAEIEAIRGVQTSKGTL
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHH
DVLMEAEWIAPAGRREVPGRPLIYKTTDTFLQHFGLSSRKDLPGIDDLRAAGLLDPVDLA
HHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHH
FEAAMGELDLVKDGEEA
HHHHHCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]