| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486620
Identifier: 103486620
GI number: 103486620
Start: 1170695
End: 1171825
Strand: Direct
Name: 103486620
Synonym: Sala_1132
Alternate gene names: NA
Gene position: 1170695-1171825 (Clockwise)
Preceding gene: 103486612
Following gene: 103486621
Centisome position: 35.0
GC content: 69.41
Gene sequence:
>1131_bases ATGACCGGCACCGCCCCTTCCGCAACCGACGTCCTGATCGTTGGCGCGGGGATTGCGGGCGCCAGCCTTGCGGCCGCGCT CGCGCCGTGGCGCCGCGTCCTGCTTGTCGAGGCGGAGGATACGCCCGGTTATCACGCAACGGGCCGGTCGGCCGCCTTCT GGCATGAAAGCTATGGTGGCGCCGGGGTGCAGCCACTGACCCGCGCGTCGTTGGATGCACTCGACCGGCCGCCTGCCGAT TTTGCCGAGCAGGGTTTCCTTACCCCACGCGGCGCGCTCACGCTGGGGCGGTCGGTCGATGCCGTCGCCGTCGATGCTTT TGCGGCCGCGTTTTCCGAGAAAGGCGTCGCTGTCGACCGGATTTCGGGTGCCGCCGTCGCAGCGCATATCCCTGGACTTC GCCCGCATTGGTGCGAAGCGGCCTACGAAGCAGCGTGCCGCGACATCGACGTCGGCAGGCTGCACGCCGCCTATCTGCGC GCCGCGAAGCGCGCGGGCGCGTCGCTCGTCACGCGGGCTCCTTTTCGCCGCGCGCGCCGCATGACGCAGGGGTGGGAGGT AGAGGTCGGCGGTGCGACGATCCGCGCCGACCTGCTCGTCAATGCTGCCGGCGCCTGGGCCGATCAGGTCGCGGCGGCTT CGGGGGTCGCGCCGGTCGGTATTCAGCCCCGTCGCCGGACGATGCTGCAATTGCGGCTTGGTGTGCCTGTTCCCGCCGAC TTGCCGCTGGTCATCGACATCGGCGGCGCTTTTTATTTCAAGGGCGAGAGCGAGGGACGCATCTGGCTTACCCCGCACGA CGAAACGCCCGTCGATCCACACGACGTGGTTCCTGAGGAGATCGACGTTGCAACGGCGATTGACCGTTTGCAGTCGGTCG TCGACTGGCCGGTCGCTGCTATCGAGCGCAAATGGGCCGGGCTGCGCAGCTTCGCGCCCGACCGGCTTCCGGTGTTCGGA GCCGACCGGCATGAGCCGCGTTTCATCTGGTGCGCCGGGCAGGGCGGCTTTGGCATCCAGACGGCCCCGGCGATCGCGGC GTTGCTTGCCGCGCAGTTGGGGGCGCCGGAGCCACAGGGCGCGATCGGATGGATCGACCCGTCACCCTTCGCGGCGTCGC GCTTCGGGTAG
Upstream 100 bases:
>100_bases TCCATCGGCCCGCTCGTAATGCTTATGGCTTACCAAAGCGTAACCATGTTCGCAGCGCCGCCGCGCTTGCATTCCGCGGG GCAACCGATATGCGGCCAGC
Downstream 100 bases:
>100_bases CCATCGCCCCTTGCGCGCGAAAATCGCTCGATTAGCATGGCCTTCGGCCGCCAGCCCCGGCGCGGCGCGACCAGTGGAGG ATGGCATGGCCCATTATTTC
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: Oxidoreductase; Glycine/D-Amino Acid Oxidase; Amino Acid Oxidase; FAD-Dependent Oxidoreductase; FAD Dependent Oxidoreductase Domain-Containing Protein; Glycine Oxidase; FAD Dependent Oxidoreductase Family; Oxidase; FAD-Dependent Glycerol-3-Phosphate Dehydrogenase Protein; Fad Dependent Oxidoreductase
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MTGTAPSATDVLIVGAGIAGASLAAALAPWRRVLLVEAEDTPGYHATGRSAAFWHESYGGAGVQPLTRASLDALDRPPAD FAEQGFLTPRGALTLGRSVDAVAVDAFAAAFSEKGVAVDRISGAAVAAHIPGLRPHWCEAAYEAACRDIDVGRLHAAYLR AAKRAGASLVTRAPFRRARRMTQGWEVEVGGATIRADLLVNAAGAWADQVAAASGVAPVGIQPRRRTMLQLRLGVPVPAD LPLVIDIGGAFYFKGESEGRIWLTPHDETPVDPHDVVPEEIDVATAIDRLQSVVDWPVAAIERKWAGLRSFAPDRLPVFG ADRHEPRFIWCAGQGGFGIQTAPAIAALLAAQLGAPEPQGAIGWIDPSPFAASRFG
Sequences:
>Translated_376_residues MTGTAPSATDVLIVGAGIAGASLAAALAPWRRVLLVEAEDTPGYHATGRSAAFWHESYGGAGVQPLTRASLDALDRPPAD FAEQGFLTPRGALTLGRSVDAVAVDAFAAAFSEKGVAVDRISGAAVAAHIPGLRPHWCEAAYEAACRDIDVGRLHAAYLR AAKRAGASLVTRAPFRRARRMTQGWEVEVGGATIRADLLVNAAGAWADQVAAASGVAPVGIQPRRRTMLQLRLGVPVPAD LPLVIDIGGAFYFKGESEGRIWLTPHDETPVDPHDVVPEEIDVATAIDRLQSVVDWPVAAIERKWAGLRSFAPDRLPVFG ADRHEPRFIWCAGQGGFGIQTAPAIAALLAAQLGAPEPQGAIGWIDPSPFAASRFG >Mature_375_residues TGTAPSATDVLIVGAGIAGASLAAALAPWRRVLLVEAEDTPGYHATGRSAAFWHESYGGAGVQPLTRASLDALDRPPADF AEQGFLTPRGALTLGRSVDAVAVDAFAAAFSEKGVAVDRISGAAVAAHIPGLRPHWCEAAYEAACRDIDVGRLHAAYLRA AKRAGASLVTRAPFRRARRMTQGWEVEVGGATIRADLLVNAAGAWADQVAAASGVAPVGIQPRRRTMLQLRLGVPVPADL PLVIDIGGAFYFKGESEGRIWLTPHDETPVDPHDVVPEEIDVATAIDRLQSVVDWPVAAIERKWAGLRSFAPDRLPVFGA DRHEPRFIWCAGQGGFGIQTAPAIAALLAAQLGAPEPQGAIGWIDPSPFAASRFG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI24797151, Length=390, Percent_Identity=24.6153846153846, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39498; Mature: 39367
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTAPSATDVLIVGAGIAGASLAAALAPWRRVLLVEAEDTPGYHATGRSAAFWHESYGG CCCCCCCCCCEEEEECCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCEEEEECCCCC AGVQPLTRASLDALDRPPADFAEQGFLTPRGALTLGRSVDAVAVDAFAAAFSEKGVAVDR CCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEC ISGAAVAAHIPGLRPHWCEAAYEAACRDIDVGRLHAAYLRAAKRAGASLVTRAPFRRARR CCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH MTQGWEVEVGGATIRADLLVNAAGAWADQVAAASGVAPVGIQPRRRTMLQLRLGVPVPAD CCCCCEEEECCEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHEEEEEEECCCCCCC LPLVIDIGGAFYFKGESEGRIWLTPHDETPVDPHDVVPEEIDVATAIDRLQSVVDWPVAA CCEEEEECCEEEEECCCCCEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH IERKWAGLRSFAPDRLPVFGADRHEPRFIWCAGQGGFGIQTAPAIAALLAAQLGAPEPQG HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC AIGWIDPSPFAASRFG CEECCCCCCCCCCCCC >Mature Secondary Structure TGTAPSATDVLIVGAGIAGASLAAALAPWRRVLLVEAEDTPGYHATGRSAAFWHESYGG CCCCCCCCCEEEEECCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCEEEEECCCCC AGVQPLTRASLDALDRPPADFAEQGFLTPRGALTLGRSVDAVAVDAFAAAFSEKGVAVDR CCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEC ISGAAVAAHIPGLRPHWCEAAYEAACRDIDVGRLHAAYLRAAKRAGASLVTRAPFRRARR CCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH MTQGWEVEVGGATIRADLLVNAAGAWADQVAAASGVAPVGIQPRRRTMLQLRLGVPVPAD CCCCCEEEECCEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHEEEEEEECCCCCCC LPLVIDIGGAFYFKGESEGRIWLTPHDETPVDPHDVVPEEIDVATAIDRLQSVVDWPVAA CCEEEEECCEEEEECCCCCEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH IERKWAGLRSFAPDRLPVFGADRHEPRFIWCAGQGGFGIQTAPAIAALLAAQLGAPEPQG HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC AIGWIDPSPFAASRFG CEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA