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The map label for this gene is hofQ [C]

Identifier: 103486617

GI number: 103486617

Start: 1167543

End: 1169024

Strand: Reverse

Name: hofQ [C]

Synonym: Sala_1129

Alternate gene names: 103486617

Gene position: 1169024-1167543 (Counterclockwise)

Preceding gene: 103486618

Following gene: 103486616

Centisome position: 34.95

GC content: 65.38

Gene sequence:

>1482_bases
ATGAACAGCAAAGCCAATTTCAAGGCGGCGGCTCTGGCGCGCACCCTCGCCATCGGCCTCGTGGCAGCGACGCTGATAGC
GGCCCCGTCGCGACCCGTCGCGGCGCAGGCGGTACAGAATGCCAGCAGCAGCATCGACCTTTCGGTCGGTCGCGGTCGCC
TGATCAGCTTGCCCGCCGCGATGAGTGACGTGTTCGTTGCCGACGACAAGGTCGCCGATGTGCAGGTCCGTTCGAGCCGC
CAGCTCTATGTCTTTGCCAAGGCGCCCGGCGAAACGAGCATCTATGCCACCGACGCCAGCGGACGGGTCGTGTTCTCGAC
CGTCGCGCGCGTCGGCAACAATATCGAGACGATCGACCAGATGCTGTCATTGGCAATGCCCGAAGCAAGCATTGCGGCGA
ACACGATGAACGGCTTTGTGCTGCTCACCGGCACCGTCCGGTCGCCCGACGATGCGGCCGAAGCCGAACGGCTGGTACAG
GCCTTTGTCGGCGATCAGACCAAGGTGCTCTCGCGTCTGCGCACGGCGACGCCGCTGCAGGTCAATCTGCAGGTCCGTAT
CGCCGAGGTGAACCGCTCGCTCGTCAAGGAGTTGAGCGGAAACCTGTTGACCCGCGACACCGACGGCCCCCTTGGCAACG
GTTTTCTGGGTGGGGTGTTCGGCGGCCGCCAGGCGGGCACGATCACGACCGACGCCAACGGCAATACCATCTACTCCATC
ACGACTCCGCCCGGAACACGCAGCCTGGCCGGAGCGGGCCGCCTGTTCGGGCTCGACCTGATCGCTTCGCTCGACATCGG
CGAGCGTTCGGGACTGGTGGCGACGCTGGCACAGCCCAATCTCACGGCGATTTCGGGCGAGACCGCCGACTTCCTGGCGG
GCGGCGAGTTTCCCGTGCCGATCCCCGGCAATTTCGCGGGGACGACCATCGAGTATCGCAAATATGGCGTCAGCCTGGCC
TATACGCCGACCGTGCTGTCGAACGGCCGCATCAGCCTGCGCGTCCGTCCCGAAGTTTCGGAGCTGTCGACCGAAGGCGC
GATCGAGATGCAGGGGTTTCAGATTCCCGCGCTCACGATCCGCCGCGCCGAAACCACGGTCGAGCTGGGTTCGGGCGAAA
GCTTCATGATCGCCGGATTGCTCAACAACCGTTCGATCGGCGCCATCGACAAGATGCCGGGCCTCGGCGACGTGCCGCTG
CTCGGCACATTGTTCAAGTCGGACAGCTTCCGCCGCGGCGAGACCGAACTCGTCATCGTCGTGACGCCCTATCTGGTCGA
ACCCGTCTCGGCGAACGACATCAAGCTGCCGACCGATGCGTTCCGCGATGCCGACGACTTGCAACGCCTGCTGCTCAACC
AGACGAGCGATGGCGTGACGGGCGGCGACCGTCCGAAGCCACGCCTCGACTCCAATGTGGGTGATGCCGACCGCCCGCGC
GGCGGCGGCAGCGACGCCTCGCCCGGTTTCAGCATCAAGTGA

Upstream 100 bases:

>100_bases
CCGGCCAATGACGGTCGCGGAGTGTCCGCGCCGACCGGCCCGGTCGTGCGCGTGACCCGCGGCGACAAGATGACCGAAGT
TCCGGTTGGGGGTAAGTAAG

Downstream 100 bases:

>100_bases
CACGGCCGATTTCAGGAGCAAAGTGATGAAAAATATCGCAACTTGGACGGTCCTGGCGCTGGCGACGACCCTCGCCGGAT
GCGCGGGCAGCGCCTACAGC

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MNSKANFKAAALARTLAIGLVAATLIAAPSRPVAAQAVQNASSSIDLSVGRGRLISLPAAMSDVFVADDKVADVQVRSSR
QLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQMLSLAMPEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQ
AFVGDQTKVLSRLRTATPLQVNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNTIYSI
TTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGEFPVPIPGNFAGTTIEYRKYGVSLA
YTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQIPALTIRRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPL
LGTLFKSDSFRRGETELVIVVTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDSNVGDADRPR
GGGSDASPGFSIK

Sequences:

>Translated_493_residues
MNSKANFKAAALARTLAIGLVAATLIAAPSRPVAAQAVQNASSSIDLSVGRGRLISLPAAMSDVFVADDKVADVQVRSSR
QLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQMLSLAMPEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQ
AFVGDQTKVLSRLRTATPLQVNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNTIYSI
TTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGEFPVPIPGNFAGTTIEYRKYGVSLA
YTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQIPALTIRRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPL
LGTLFKSDSFRRGETELVIVVTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDSNVGDADRPR
GGGSDASPGFSIK
>Mature_493_residues
MNSKANFKAAALARTLAIGLVAATLIAAPSRPVAAQAVQNASSSIDLSVGRGRLISLPAAMSDVFVADDKVADVQVRSSR
QLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQMLSLAMPEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQ
AFVGDQTKVLSRLRTATPLQVNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNTIYSI
TTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGEFPVPIPGNFAGTTIEYRKYGVSLA
YTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQIPALTIRRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPL
LGTLFKSDSFRRGETELVIVVTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDSNVGDADRPR
GGGSDASPGFSIK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=248, Percent_Identity=28.6290322580645, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082242, Length=156, Percent_Identity=27.5641025641026, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 51608; Mature: 51608

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKANFKAAALARTLAIGLVAATLIAAPSRPVAAQAVQNASSSIDLSVGRGRLISLPAA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCEEEECCCH
MSDVFVADDKVADVQVRSSRQLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQ
HCCEEEECCCEEEEEEECCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHH
MLSLAMPEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQAFVGDQTKVLSRLRTATPLQ
HHHHHCCCHHHEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCEE
VNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNTIYSI
EEEEEEEEHHHHHHHHHHCCCEEEECCCCCCCCCCEECCCCCCCCCEEEECCCCCEEEEE
TTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGEFPVP
ECCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCEEEECCCCHHHCCCCCCCCC
IPGNFAGTTIEYRKYGVSLAYTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQIPALTI
CCCCCCCCEEEEHHHCEEEEECCEEECCCEEEEEECCCHHHHCCCCCEEECCEECCEEEE
RRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPLLGTLFKSDSFRRGETELVIV
EECCEEEEECCCCEEEEEEEECCCCCCCHHCCCCCCCCCHHHHHHCCCCCCCCCEEEEEE
VTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDSNVGDADRPR
ECCCEECCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGGSDASPGFSIK
CCCCCCCCCCCCC
>Mature Secondary Structure
MNSKANFKAAALARTLAIGLVAATLIAAPSRPVAAQAVQNASSSIDLSVGRGRLISLPAA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCEEEECCCH
MSDVFVADDKVADVQVRSSRQLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQ
HCCEEEECCCEEEEEEECCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHH
MLSLAMPEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQAFVGDQTKVLSRLRTATPLQ
HHHHHCCCHHHEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCEE
VNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNTIYSI
EEEEEEEEHHHHHHHHHHCCCEEEECCCCCCCCCCEECCCCCCCCCEEEECCCCCEEEEE
TTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGEFPVP
ECCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCEEEECCCCHHHCCCCCCCCC
IPGNFAGTTIEYRKYGVSLAYTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQIPALTI
CCCCCCCCEEEEHHHCEEEEECCEEECCCEEEEEECCCHHHHCCCCCEEECCEECCEEEE
RRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPLLGTLFKSDSFRRGETELVIV
EECCEEEEECCCCEEEEEEEECCCCCCCHHCCCCCCCCCHHHHHHCCCCCCCCCEEEEEE
VTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDSNVGDADRPR
ECCCEECCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGGSDASPGFSIK
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]