| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486596
Identifier: 103486596
GI number: 103486596
Start: 1140014
End: 1140949
Strand: Reverse
Name: 103486596
Synonym: Sala_1107
Alternate gene names: NA
Gene position: 1140949-1140014 (Counterclockwise)
Preceding gene: 103486597
Following gene: 103486595
Centisome position: 34.11
GC content: 68.8
Gene sequence:
>936_bases ATGCCGGTTGAACCGAACGACGCCGCCGAAGCGCGCGCGATCGACTGGCTGGTTCGCCAGCGCGATCCGGCATTCGACGA TTGGGATGGCTTCACCGACTGGCTGGCCGAAGACGCGAGCCATGCGGCCGTTTACGACGCGATCGCCAGCCTCGACCGCG ATCTCGATGCGTTGCCGCCTATCGCGCCGACCCTGACAATAGCCGATACCCGATCGTCGCAACGTCTGTCGCGGCGGCGC TGGTTCGGCGGCGCCGTCGCCGCCGCGCTGGTCGGCGCCATCGGCCTGTCAGCGTCCGGCCTGCTCGGAAACGGCGACCG CATCGAAACCGCAGCAGGCGAGCATCGCACCCTTACCCTCGCCGATGGTTCGACGATCGACATCAACGGCGGTTCGGTGG TCGAGATCGACGACGACCGGCCGCGCTTTGCGCGCCTCGAATCGGGCGAGGCGATGTTCCGCGTCGCGCACCGCGACGGC GACCCCTTTGTCGTCGAAGCGGGCGGCGCGCGGATTGTCGACCTGGGCACCGCGTTCAACGTGGTGCGGCGCGATCGCGC GACATCGGTTGCCGTGTCCGAGGGCGTCGTCCTTTACAACCCCGACCGCGAAAATGTCCGGCTGGTGGCCGGCAAGGGAC TCGATGCGCGCGACGGCGACGGCGGCCCGCCGGTGGTGAAGGACGTCGATATCGCCAATGTCGGCGGCTGGCGGAGCGGC CTGCTCGTCTATAATGGCGCGCCGCTGTCGGTCGTCGCCGAGGATCTGCGCCGAACGGCGGCGATTCAGATCAGTATTGC GCCCGACGCCGCGATGGTGTCGTTCCGTGGCGCGCTGATCATCGACAAGGATCGCGGTCGCACGGTCGCCGACCTCGCCG CCTTGTCGGGAACGCGCGCCGAACGGCGCGGCGAAGGCTGGATACTGACCCGCTGA
Upstream 100 bases:
>100_bases CAGCGCGAGATTGCCCGCGAAATGGGCGTCAGCCTGAGCACGGTCGAAGCCGATCTGCGCAAGGTTTATGCGGCGCTGGC GGCGCTGAGGAGGCAGTTCG
Downstream 100 bases:
>100_bases CGATGGAAACGCGCCTTGGCTTTGTCGCAGCAGCGATGGTGCTTTGCCTGCCGGTGCCGGCGAAGGCGGCCGAGGAACGC GCCTTCGACGTGCGCGGCGG
Product: putative FecR
Products: NA
Alternate protein names: FecR Protein; Sigma Factor Regulatory Protein FecR/PupR Family; Transmembrane Sensor; Regulatory Protein; FecR Family Protein; Anti-Feci Sigma Factor Fecr; Fe2+-Dicitrate Sensor Membrane Component; FecR-Like Transmembrane Sensor; Two Component Sensor Histidine Kinase FecR/PupR; Anti-Sigma Factor; Transcriptional Regulator; Transmembrane Sensor Protein; Anti-Sigma Factor Protein FecR Family; Iron Transport-Sensory Transduction Protein; Anti-Sigma Factor FecR Family; Ferric Citrate Sensor FecR; CytoChrome C Oxidase Cbb3-Type Subunit I; FecR Iron Siderophore Sensor Protein; Anti-Sigma Factor FecR-Like Protein; Inner Membrane Sensor For Iron Transport; Protein FecR; Anti Sigma Factor; Two Component Sensor Kinase; IRON Transport Regulator Transmembrane Protein; Iron Transporter-Like Protein; IRON Transport-Sensory Transduction Transmembrane Protein; Iron-Dicitrate Sensor Membrane Component; Transcriptional Regulator Putative
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MPVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPPIAPTLTIADTRSSQRLSRRR WFGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTLADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDG DPFVVEAGGARIVDLGTAFNVVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSG LLVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRAERRGEGWILTR
Sequences:
>Translated_311_residues MPVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPPIAPTLTIADTRSSQRLSRRR WFGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTLADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDG DPFVVEAGGARIVDLGTAFNVVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSG LLVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRAERRGEGWILTR >Mature_310_residues PVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPPIAPTLTIADTRSSQRLSRRRW FGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTLADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDGD PFVVEAGGARIVDLGTAFNVVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSGL LVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRAERRGEGWILTR
Specific function: Unknown
COG id: COG3712
COG function: function code PT; Fe2+-dicitrate sensor, membrane component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33059; Mature: 32928
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPP CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHCCCC IAPTLTIADTRSSQRLSRRRWFGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTL CCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEE ADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDGDPFVVEAGGARIVDLGTAFN ECCCEEEECCCEEEEECCCCCCEEEECCCCEEEEEEECCCCEEEEECCCCEEEECCHHHH VVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSG HHHHCCCCEEEECCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEECCEECCCCCCCC LLVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRA EEEECCCCHHHHHHHHHCEEEEEEEECCCCEEEEECCEEEEECCCCCCHHHHHHHCCCCH ERRGEGWILTR HHCCCCEEEEC >Mature Secondary Structure PVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPP CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHCCCC IAPTLTIADTRSSQRLSRRRWFGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTL CCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEE ADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDGDPFVVEAGGARIVDLGTAFN ECCCEEEECCCEEEEECCCCCCEEEECCCCEEEEEEECCCCEEEEECCCCEEEECCHHHH VVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSG HHHHCCCCEEEECCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEECCEECCCCCCCC LLVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRA EEEECCCCHHHHHHHHHCEEEEEEEECCCCEEEEECCEEEEECCCCCCHHHHHHHCCCCH ERRGEGWILTR HHCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA