| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is fhuA [C]
Identifier: 103486595
GI number: 103486595
Start: 1137522
End: 1140011
Strand: Reverse
Name: fhuA [C]
Synonym: Sala_1106
Alternate gene names: 103486595
Gene position: 1140011-1137522 (Counterclockwise)
Preceding gene: 103486596
Following gene: 103486587
Centisome position: 34.08
GC content: 66.31
Gene sequence:
>2490_bases ATGGAAACGCGCCTTGGCTTTGTCGCAGCAGCGATGGTGCTTTGCCTGCCGGTGCCGGCGAAGGCGGCCGAGGAACGCGC CTTCGACGTGCGCGGCGGCAGCCTGTCGGCCGTGGTGCCGGTCATCAGCCGGCAAGGCGGCGTCAGCATCAGCGTCGCCG ACGCCCGGTTATGGAAAGCGCGGGTCCGGTCGGTGCGCGGACGGATGCCCGTCGACGAAGCGATCCGCCGCCTGCTTGCG GGGACCGACGCACATGCCGTTCGGGTCAGTGCGACGAGCTGGCGCATCGAACGGCGCCCGGCGCCGCAGCGTAGCCGCGC CGCTCCCGCTCCGCGGCAAGTGCCCCAGCCCCGCGCACGTGAACCCGCGAACGAGGTGGTTGCCGCCGCGGCCGATACGA TCATCGTCACCGCGTCGAAGACCGACCTTCCTTACTCGCATTTCGCCGGCGTCGTCACCCAATTGGATGGCGGCGAACTG GCGTTTGGCGGGGAACGCGGGATGGACTCGATCCTGTCGCGCACCGCCACGGTCTCCTCGACCCATCTGGGTTCGGGACG CAACAAGCTGTTCATCCGCGGCATCGCCGATTCGAGTTTCACCGGCCCGACGCAGGCAACGGTCGGCCAGTATCTGGGCG ACATCAGGCTGAGTTACAACGCCCCGGACCCCGACCTGCGTCTCTATGACATCGACAATGTCGAAATCCTCGAAGGACCG CAGGGCACGCTTTACGGCGCAGGGTCGCTCGGCGGGATCATTCGCGTCATTCCGAAAGCCCCCGATCCGCGCGGCCCGAC CGTACAGGCGATCGCGGGCGCCTCGCTGACCCGGCATGGCGACCCCGGCGGCGACATCGCCGGCATTGCGAACCTGCCCG TCGGCGAGGACGGCCATGCGTTGCGCCTCGTCGGTTACATGATCACCGATGGCGGCTATATCGACAATCCACTCCGCGGA CAGAATGACGTCAATCGCGTGCATATCCGGGGCGGCCGCGGCACTCTTCGGCTCGATGCGGGAGACGGCTGGACCGTCGA TATCGGCGGCATCTATCAATCGAACACCTCCGACGATGCCCAATATGCCGACAAGGATGCACCGCCGCTCACCCGCCGCT CGATGATCGAGCAACCGGCGAAGGCGCGCTACGGTCTCGGCACGCTCGTCGTGATGAAGGATTGGGGCGATTTGCGCTTT CAATCGTCGAACGCCTTTATCGACCACCGGCTGTTCGAACGCTTCGACGCCAGCCTGCCGGTCGCGGGCGAACTGGACGG CTCCGGGTCGGGCAACGCCGTCGGGACCGTCGACGTCGAACGCCTCTTCGCGCCGATCGACATCACGCCGTCGCGCGACG TGCCGCGTCGGCTCGAACAGCATAATGCGACGCGGATGTTCGCCAGCGAAAACCGGCTGTGGCGTCCCTATCACGACGGG TTTGGCTGGGTCGCCGGGGCAAGCTTCATCACCAATCGCGCGCGACAGGAACGCGAATATGCCTATGGGCCGCTCCATAC CCCGCTGCCCGGCGTGACCAACCGGATCACCGAGTGGACGGGCTATGCCGAGGCGACCAAGGAACTGCTGACGGGTCTTG TCGCCTCCGGCGGGCTGCGGCTGTCGCACGTGCGGCTTGGCGGCATGGCCGAGGATGTGCCGTTCGCGCTTGCCCAGGCG GGGCGAGCGACGACGGCATCGCGGCACGAGACCGACCTCTTGCCCTCCGCCTCGCTGCTTGCGATGCCGCTCGACAATCT GCGGCTCTACGCCCGCTATCAGGAGGGATTTCGCCCCGGCGGGCTTGCCGTCGACGGCAATTTTGTGCGGCGTTTCAGAA ACGATCGCGTCCAGACGTGGGAAGCGGGGGTGCGCTTCGGCGACCGAAAGCAGACGCTGCTCGACGCGACCTTATCTTTG TCGCACAGCCGCTGGCGCAACATCCAGGCCGACTTCATCGACAGCAACGGCTTTCCGACCACCGCCAACATCGGCGACGG CCGCATCACCAGCCTGTCGGGCGCGCTCGCGATGCGGCCGACCGACGCGCTGACCCTTGAACTGGGCGCGGTCTACAACC ACAGCCGCGTCGATGATTTGTCGCCGGAGATCCTGCCCGTTTTCGCCGCGACCCCTGCGCGGCTGGGGCGCATTCCCAAT GTCGCAAGCCATGCCGTGCGCGGATCGGTCAACTATGCGACGATGATCGGCGATGAGGATTTTCGTATTAACGGATGGGC CAACTATATTGGCCCATCCCGGCTTGGCATCGGCCCGGTGCTGGGCGAAAGCCAGGGCGATTATATCGATACAGGGCTTG CGATGCGTGTCGGCAACGACCGCCGCGGCCTGTCGCTGACGCTCACCAACCTGTTCGATTCGCGGGGAAATCGCTTCTCG CTCGGCACACCCTTCGTCGAGGGTAATGCGGGTTTCCTGACCCCGCTCCGCCCCCGCACGCTGCGCATCGCCGTCGACGT CGCTTATTAG
Upstream 100 bases:
>100_bases TCATCGACAAGGATCGCGGTCGCACGGTCGCCGACCTCGCCGCCTTGTCGGGAACGCGCGCCGAACGGCGCGGCGAAGGC TGGATACTGACCCGCTGACG
Downstream 100 bases:
>100_bases GGCTTCTGACCCTTAGGGTCAGGACCCATTAATTACCCGTTCGAGGTTTGAGGCGATTTTGCTCAGGGCGAGGAGGAAAG GCGTAGGAATATGAATATAT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug Domain Protein; Nb-Dependent Receptor; Outer Membrane nB-Dependent Receptor; NB-Dependent Receptor Domain Protein; NB Dependent Receptor
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues METRLGFVAAAMVLCLPVPAKAAEERAFDVRGGSLSAVVPVISRQGGVSISVADARLWKARVRSVRGRMPVDEAIRRLLA GTDAHAVRVSATSWRIERRPAPQRSRAAPAPRQVPQPRAREPANEVVAAAADTIIVTASKTDLPYSHFAGVVTQLDGGEL AFGGERGMDSILSRTATVSSTHLGSGRNKLFIRGIADSSFTGPTQATVGQYLGDIRLSYNAPDPDLRLYDIDNVEILEGP QGTLYGAGSLGGIIRVIPKAPDPRGPTVQAIAGASLTRHGDPGGDIAGIANLPVGEDGHALRLVGYMITDGGYIDNPLRG QNDVNRVHIRGGRGTLRLDAGDGWTVDIGGIYQSNTSDDAQYADKDAPPLTRRSMIEQPAKARYGLGTLVVMKDWGDLRF QSSNAFIDHRLFERFDASLPVAGELDGSGSGNAVGTVDVERLFAPIDITPSRDVPRRLEQHNATRMFASENRLWRPYHDG FGWVAGASFITNRARQEREYAYGPLHTPLPGVTNRITEWTGYAEATKELLTGLVASGGLRLSHVRLGGMAEDVPFALAQA GRATTASRHETDLLPSASLLAMPLDNLRLYARYQEGFRPGGLAVDGNFVRRFRNDRVQTWEAGVRFGDRKQTLLDATLSL SHSRWRNIQADFIDSNGFPTTANIGDGRITSLSGALAMRPTDALTLELGAVYNHSRVDDLSPEILPVFAATPARLGRIPN VASHAVRGSVNYATMIGDEDFRINGWANYIGPSRLGIGPVLGESQGDYIDTGLAMRVGNDRRGLSLTLTNLFDSRGNRFS LGTPFVEGNAGFLTPLRPRTLRIAVDVAY
Sequences:
>Translated_829_residues METRLGFVAAAMVLCLPVPAKAAEERAFDVRGGSLSAVVPVISRQGGVSISVADARLWKARVRSVRGRMPVDEAIRRLLA GTDAHAVRVSATSWRIERRPAPQRSRAAPAPRQVPQPRAREPANEVVAAAADTIIVTASKTDLPYSHFAGVVTQLDGGEL AFGGERGMDSILSRTATVSSTHLGSGRNKLFIRGIADSSFTGPTQATVGQYLGDIRLSYNAPDPDLRLYDIDNVEILEGP QGTLYGAGSLGGIIRVIPKAPDPRGPTVQAIAGASLTRHGDPGGDIAGIANLPVGEDGHALRLVGYMITDGGYIDNPLRG QNDVNRVHIRGGRGTLRLDAGDGWTVDIGGIYQSNTSDDAQYADKDAPPLTRRSMIEQPAKARYGLGTLVVMKDWGDLRF QSSNAFIDHRLFERFDASLPVAGELDGSGSGNAVGTVDVERLFAPIDITPSRDVPRRLEQHNATRMFASENRLWRPYHDG FGWVAGASFITNRARQEREYAYGPLHTPLPGVTNRITEWTGYAEATKELLTGLVASGGLRLSHVRLGGMAEDVPFALAQA GRATTASRHETDLLPSASLLAMPLDNLRLYARYQEGFRPGGLAVDGNFVRRFRNDRVQTWEAGVRFGDRKQTLLDATLSL SHSRWRNIQADFIDSNGFPTTANIGDGRITSLSGALAMRPTDALTLELGAVYNHSRVDDLSPEILPVFAATPARLGRIPN VASHAVRGSVNYATMIGDEDFRINGWANYIGPSRLGIGPVLGESQGDYIDTGLAMRVGNDRRGLSLTLTNLFDSRGNRFS LGTPFVEGNAGFLTPLRPRTLRIAVDVAY >Mature_829_residues METRLGFVAAAMVLCLPVPAKAAEERAFDVRGGSLSAVVPVISRQGGVSISVADARLWKARVRSVRGRMPVDEAIRRLLA GTDAHAVRVSATSWRIERRPAPQRSRAAPAPRQVPQPRAREPANEVVAAAADTIIVTASKTDLPYSHFAGVVTQLDGGEL AFGGERGMDSILSRTATVSSTHLGSGRNKLFIRGIADSSFTGPTQATVGQYLGDIRLSYNAPDPDLRLYDIDNVEILEGP QGTLYGAGSLGGIIRVIPKAPDPRGPTVQAIAGASLTRHGDPGGDIAGIANLPVGEDGHALRLVGYMITDGGYIDNPLRG QNDVNRVHIRGGRGTLRLDAGDGWTVDIGGIYQSNTSDDAQYADKDAPPLTRRSMIEQPAKARYGLGTLVVMKDWGDLRF QSSNAFIDHRLFERFDASLPVAGELDGSGSGNAVGTVDVERLFAPIDITPSRDVPRRLEQHNATRMFASENRLWRPYHDG FGWVAGASFITNRARQEREYAYGPLHTPLPGVTNRITEWTGYAEATKELLTGLVASGGLRLSHVRLGGMAEDVPFALAQA GRATTASRHETDLLPSASLLAMPLDNLRLYARYQEGFRPGGLAVDGNFVRRFRNDRVQTWEAGVRFGDRKQTLLDATLSL SHSRWRNIQADFIDSNGFPTTANIGDGRITSLSGALAMRPTDALTLELGAVYNHSRVDDLSPEILPVFAATPARLGRIPN VASHAVRGSVNYATMIGDEDFRINGWANYIGPSRLGIGPVLGESQGDYIDTGLAMRVGNDRRGLSLTLTNLFDSRGNRFS LGTPFVEGNAGFLTPLRPRTLRIAVDVAY
Specific function: This Receptor Binds The Ferrichrome-Iron Ligand. It Interacts With The Tonb Protein, Which Is Responsible For Energy Coupling Of The Ferrichrome-Promoted Iron Transport System. Acts As A Receptor For Bacteriophage T5 As Well As T1, Phi80 And Colicin M. B
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89362; Mature: 89362
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METRLGFVAAAMVLCLPVPAKAAEERAFDVRGGSLSAVVPVISRQGGVSISVADARLWKA CCCCHHHHHHHHHHHCCCCCHHHHCCEEEECCCCCEEHHHHHHCCCCCEEEEHHHHHHHH RVRSVRGRMPVDEAIRRLLAGTDAHAVRVSATSWRIERRPAPQRSRAAPAPRQVPQPRAR HHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC EPANEVVAAAADTIIVTASKTDLPYSHFAGVVTQLDGGELAFGGERGMDSILSRTATVSS CCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHHCCC THLGSGRNKLFIRGIADSSFTGPTQATVGQYLGDIRLSYNAPDPDLRLYDIDNVEILEGP CCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCEEEEECCCCCCEEEEECCCEEEEECC QGTLYGAGSLGGIIRVIPKAPDPRGPTVQAIAGASLTRHGDPGGDIAGIANLPVGEDGHA CCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCEECCCCCCCCEEEEECCCCCCCCCE LRLVGYMITDGGYIDNPLRGQNDVNRVHIRGGRGTLRLDAGDGWTVDIGGIYQSNTSDDA EEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEECCEEECCCCCCH QYADKDAPPLTRRSMIEQPAKARYGLGTLVVMKDWGDLRFQSSNAFIDHRLFERFDASLP HHCCCCCCCCHHHHHHCCCHHHHCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCC VAGELDGSGSGNAVGTVDVERLFAPIDITPSRDVPRRLEQHNATRMFASENRLWRPYHDG CCCCCCCCCCCCEEEEEEHHHEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCHHCC FGWVAGASFITNRARQEREYAYGPLHTPLPGVTNRITEWTGYAEATKELLTGLVASGGLR CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEE LSHVRLGGMAEDVPFALAQAGRATTASRHETDLLPSASLLAMPLDNLRLYARYQEGFRPG EEEEEECCCCCCCCHHHHHCCCCCCCCCCHHCCCCCCCEEECCCCHHEEEEEHHCCCCCC GLAVDGNFVRRFRNDRVQTWEAGVRFGDRKQTLLDATLSLSHSRWRNIQADFIDSNGFPT CEEECHHHHHHHHCCCCEEHHHCCCCCCCHHHHHHHHHHHCHHHHCCCEEEEECCCCCCC TANIGDGRITSLSGALAMRPTDALTLELGAVYNHSRVDDLSPEILPVFAATPARLGRIPN CCCCCCCEEEEECCEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCHHHHCCCCC VASHAVRGSVNYATMIGDEDFRINGWANYIGPSRLGIGPVLGESQGDYIDTGLAMRVGND HHHHHHCCCCEEEEEECCCCEEECCCHHCCCCCCCCCCCCCCCCCCCEECCCEEEEECCC RRGLSLTLTNLFDSRGNRFSLGTPFVEGNAGFLTPLRPRTLRIAVDVAY CCCEEEEEEHHHHCCCCEEECCCCEEECCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure METRLGFVAAAMVLCLPVPAKAAEERAFDVRGGSLSAVVPVISRQGGVSISVADARLWKA CCCCHHHHHHHHHHHCCCCCHHHHCCEEEECCCCCEEHHHHHHCCCCCEEEEHHHHHHHH RVRSVRGRMPVDEAIRRLLAGTDAHAVRVSATSWRIERRPAPQRSRAAPAPRQVPQPRAR HHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC EPANEVVAAAADTIIVTASKTDLPYSHFAGVVTQLDGGELAFGGERGMDSILSRTATVSS CCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHHCCC THLGSGRNKLFIRGIADSSFTGPTQATVGQYLGDIRLSYNAPDPDLRLYDIDNVEILEGP CCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCEEEEECCCCCCEEEEECCCEEEEECC QGTLYGAGSLGGIIRVIPKAPDPRGPTVQAIAGASLTRHGDPGGDIAGIANLPVGEDGHA CCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCEECCCCCCCCEEEEECCCCCCCCCE LRLVGYMITDGGYIDNPLRGQNDVNRVHIRGGRGTLRLDAGDGWTVDIGGIYQSNTSDDA EEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEECCEEECCCCCCH QYADKDAPPLTRRSMIEQPAKARYGLGTLVVMKDWGDLRFQSSNAFIDHRLFERFDASLP HHCCCCCCCCHHHHHHCCCHHHHCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCC VAGELDGSGSGNAVGTVDVERLFAPIDITPSRDVPRRLEQHNATRMFASENRLWRPYHDG CCCCCCCCCCCCEEEEEEHHHEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCHHCC FGWVAGASFITNRARQEREYAYGPLHTPLPGVTNRITEWTGYAEATKELLTGLVASGGLR CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEE LSHVRLGGMAEDVPFALAQAGRATTASRHETDLLPSASLLAMPLDNLRLYARYQEGFRPG EEEEEECCCCCCCCHHHHHCCCCCCCCCCHHCCCCCCCEEECCCCHHEEEEEHHCCCCCC GLAVDGNFVRRFRNDRVQTWEAGVRFGDRKQTLLDATLSLSHSRWRNIQADFIDSNGFPT CEEECHHHHHHHHCCCCEEHHHCCCCCCCHHHHHHHHHHHCHHHHCCCEEEEECCCCCCC TANIGDGRITSLSGALAMRPTDALTLELGAVYNHSRVDDLSPEILPVFAATPARLGRIPN CCCCCCCEEEEECCEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCHHHHCCCCC VASHAVRGSVNYATMIGDEDFRINGWANYIGPSRLGIGPVLGESQGDYIDTGLAMRVGND HHHHHHCCCCEEEEEECCCCEEECCCHHCCCCCCCCCCCCCCCCCCCEECCCEEEEECCC RRGLSLTLTNLFDSRGNRFSLGTPFVEGNAGFLTPLRPRTLRIAVDVAY CCCEEEEEEHHHHCCCCEEECCCCEEECCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA