Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486596

Identifier: 103486596

GI number: 103486596

Start: 1140014

End: 1140949

Strand: Reverse

Name: 103486596

Synonym: Sala_1107

Alternate gene names: NA

Gene position: 1140949-1140014 (Counterclockwise)

Preceding gene: 103486597

Following gene: 103486595

Centisome position: 34.11

GC content: 68.8

Gene sequence:

>936_bases
ATGCCGGTTGAACCGAACGACGCCGCCGAAGCGCGCGCGATCGACTGGCTGGTTCGCCAGCGCGATCCGGCATTCGACGA
TTGGGATGGCTTCACCGACTGGCTGGCCGAAGACGCGAGCCATGCGGCCGTTTACGACGCGATCGCCAGCCTCGACCGCG
ATCTCGATGCGTTGCCGCCTATCGCGCCGACCCTGACAATAGCCGATACCCGATCGTCGCAACGTCTGTCGCGGCGGCGC
TGGTTCGGCGGCGCCGTCGCCGCCGCGCTGGTCGGCGCCATCGGCCTGTCAGCGTCCGGCCTGCTCGGAAACGGCGACCG
CATCGAAACCGCAGCAGGCGAGCATCGCACCCTTACCCTCGCCGATGGTTCGACGATCGACATCAACGGCGGTTCGGTGG
TCGAGATCGACGACGACCGGCCGCGCTTTGCGCGCCTCGAATCGGGCGAGGCGATGTTCCGCGTCGCGCACCGCGACGGC
GACCCCTTTGTCGTCGAAGCGGGCGGCGCGCGGATTGTCGACCTGGGCACCGCGTTCAACGTGGTGCGGCGCGATCGCGC
GACATCGGTTGCCGTGTCCGAGGGCGTCGTCCTTTACAACCCCGACCGCGAAAATGTCCGGCTGGTGGCCGGCAAGGGAC
TCGATGCGCGCGACGGCGACGGCGGCCCGCCGGTGGTGAAGGACGTCGATATCGCCAATGTCGGCGGCTGGCGGAGCGGC
CTGCTCGTCTATAATGGCGCGCCGCTGTCGGTCGTCGCCGAGGATCTGCGCCGAACGGCGGCGATTCAGATCAGTATTGC
GCCCGACGCCGCGATGGTGTCGTTCCGTGGCGCGCTGATCATCGACAAGGATCGCGGTCGCACGGTCGCCGACCTCGCCG
CCTTGTCGGGAACGCGCGCCGAACGGCGCGGCGAAGGCTGGATACTGACCCGCTGA

Upstream 100 bases:

>100_bases
CAGCGCGAGATTGCCCGCGAAATGGGCGTCAGCCTGAGCACGGTCGAAGCCGATCTGCGCAAGGTTTATGCGGCGCTGGC
GGCGCTGAGGAGGCAGTTCG

Downstream 100 bases:

>100_bases
CGATGGAAACGCGCCTTGGCTTTGTCGCAGCAGCGATGGTGCTTTGCCTGCCGGTGCCGGCGAAGGCGGCCGAGGAACGC
GCCTTCGACGTGCGCGGCGG

Product: putative FecR

Products: NA

Alternate protein names: FecR Protein; Sigma Factor Regulatory Protein FecR/PupR Family; Transmembrane Sensor; Regulatory Protein; FecR Family Protein; Anti-Feci Sigma Factor Fecr; Fe2+-Dicitrate Sensor Membrane Component; FecR-Like Transmembrane Sensor; Two Component Sensor Histidine Kinase FecR/PupR; Anti-Sigma Factor; Transcriptional Regulator; Transmembrane Sensor Protein; Anti-Sigma Factor Protein FecR Family; Iron Transport-Sensory Transduction Protein; Anti-Sigma Factor FecR Family; Ferric Citrate Sensor FecR; CytoChrome C Oxidase Cbb3-Type Subunit I; FecR Iron Siderophore Sensor Protein; Anti-Sigma Factor FecR-Like Protein; Inner Membrane Sensor For Iron Transport; Protein FecR; Anti Sigma Factor; Two Component Sensor Kinase; IRON Transport Regulator Transmembrane Protein; Iron Transporter-Like Protein; IRON Transport-Sensory Transduction Transmembrane Protein; Iron-Dicitrate Sensor Membrane Component; Transcriptional Regulator Putative

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MPVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPPIAPTLTIADTRSSQRLSRRR
WFGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTLADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDG
DPFVVEAGGARIVDLGTAFNVVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSG
LLVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRAERRGEGWILTR

Sequences:

>Translated_311_residues
MPVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPPIAPTLTIADTRSSQRLSRRR
WFGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTLADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDG
DPFVVEAGGARIVDLGTAFNVVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSG
LLVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRAERRGEGWILTR
>Mature_310_residues
PVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPPIAPTLTIADTRSSQRLSRRRW
FGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTLADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDGD
PFVVEAGGARIVDLGTAFNVVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSGL
LVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRAERRGEGWILTR

Specific function: Unknown

COG id: COG3712

COG function: function code PT; Fe2+-dicitrate sensor, membrane component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33059; Mature: 32928

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPP
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHCCCC
IAPTLTIADTRSSQRLSRRRWFGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTL
CCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEE
ADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDGDPFVVEAGGARIVDLGTAFN
ECCCEEEECCCEEEEECCCCCCEEEECCCCEEEEEEECCCCEEEEECCCCEEEECCHHHH
VVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSG
HHHHCCCCEEEECCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEECCEECCCCCCCC
LLVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRA
EEEECCCCHHHHHHHHHCEEEEEEEECCCCEEEEECCEEEEECCCCCCHHHHHHHCCCCH
ERRGEGWILTR
HHCCCCEEEEC
>Mature Secondary Structure 
PVEPNDAAEARAIDWLVRQRDPAFDDWDGFTDWLAEDASHAAVYDAIASLDRDLDALPP
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHCCCC
IAPTLTIADTRSSQRLSRRRWFGGAVAAALVGAIGLSASGLLGNGDRIETAAGEHRTLTL
CCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEE
ADGSTIDINGGSVVEIDDDRPRFARLESGEAMFRVAHRDGDPFVVEAGGARIVDLGTAFN
ECCCEEEECCCEEEEECCCCCCEEEECCCCEEEEEEECCCCEEEEECCCCEEEECCHHHH
VVRRDRATSVAVSEGVVLYNPDRENVRLVAGKGLDARDGDGGPPVVKDVDIANVGGWRSG
HHHHCCCCEEEECCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEECCEECCCCCCCC
LLVYNGAPLSVVAEDLRRTAAIQISIAPDAAMVSFRGALIIDKDRGRTVADLAALSGTRA
EEEECCCCHHHHHHHHHCEEEEEEEECCCCEEEEECCEEEEECCCCCCHHHHHHHCCCCH
ERRGEGWILTR
HHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA