| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yohC [C]
Identifier: 103486586
GI number: 103486586
Start: 1124996
End: 1125625
Strand: Direct
Name: yohC [C]
Synonym: Sala_1097
Alternate gene names: 103486586
Gene position: 1124996-1125625 (Clockwise)
Preceding gene: 103486584
Following gene: 103486588
Centisome position: 33.63
GC content: 65.71
Gene sequence:
>630_bases ATGATGGCTGATTTACCACCCAATGGTTCGGGTTCCGCCGCGGGCATCGTCCAGCGCGCCAGGGACATATTGCTCAGGCC CAGGGAAAGCTGGCCGGTGATCGCCGCCGAACCGGCGACGGCGCAGTCCATCTATATTCCCTATGTCCTCGTGCTGGCGG CGATCGGGCCGCTCGCCTCGCTGATCGGCGGGCAACTCGTTGGCGTCTCGGTGCTGGGCACCACATGGCATCCGCCGATG GGAGCGGCGCTCACCTCGGCCATCCTGTCCTATGGGTTGACGCTGGCGATGGTGTTTGTCCTGGCGCTCGTGATCGACGG GCTCGCGCCCAGTTTCGGCGGGCAAAAGGACCAGATCCAGGCGCTGAAGGTCGCGGCCTATTCGGGCACCGCGGCGTGGG TCGGCGGCATTTTCGGGCTGATTCCCGCGCTCGGCCTGATCGGGCTGCTCTTTGCGCTCTATGGCCTCTACATCCTCTAC CTCGGCCTGCCGGTGCTGATGAAGGTGCCGCAGGACAAGGCCGTCGGCTATGTCGCGGTCGTGGTGGTCATCGCGATCGT GCTGTTCCTCATCGTCGGCGCGGTCGTTGGCTCTGTCACCGCGCCGTCGCTGCTCGGCGCGCAAATGTGA
Upstream 100 bases:
>100_bases TGATCGGGGTTACAGATGCGTTGGTCATCGGGGCTAAACATTCCCGTGGCTTTTGCATGTCCCGATCGGGTTGCGGGCCG CATCCTAGCAGGGGAGACGC
Downstream 100 bases:
>100_bases ACCAGACCGCCGTTTGCCGTTCGAGGTGACCGTCGATCAAGGGGCAGGTCAGGGAAAAATGGAGGAGAGTGAGGGATTCG AACCCTCGGTACCCTTGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLASLIGGQLVGVSVLGTTWHPPM GAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILY LGLPVLMKVPQDKAVGYVAVVVVIAIVLFLIVGAVVGSVTAPSLLGAQM
Sequences:
>Translated_209_residues MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLASLIGGQLVGVSVLGTTWHPPM GAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILY LGLPVLMKVPQDKAVGYVAVVVVIAIVLFLIVGAVVGSVTAPSLLGAQM >Mature_209_residues MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLASLIGGQLVGVSVLGTTWHPPM GAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILY LGLPVLMKVPQDKAVGYVAVVVVIAIVLFLIVGAVVGSVTAPSLLGAQM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21347; Mature: 21347
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLAS CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH LIGGQLVGVSVLGTTWHPPMGAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQ HHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH ALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILYLGLPVLMKVPQDKAVGYVAV HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VVVIAIVLFLIVGAVVGSVTAPSLLGAQM HHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MMADLPPNGSGSAAGIVQRARDILLRPRESWPVIAAEPATAQSIYIPYVLVLAAIGPLAS CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH LIGGQLVGVSVLGTTWHPPMGAALTSAILSYGLTLAMVFVLALVIDGLAPSFGGQKDQIQ HHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH ALKVAAYSGTAAWVGGIFGLIPALGLIGLLFALYGLYILYLGLPVLMKVPQDKAVGYVAV HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VVVIAIVLFLIVGAVVGSVTAPSLLGAQM HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA