Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486581

Identifier: 103486581

GI number: 103486581

Start: 1121459

End: 1122292

Strand: Direct

Name: 103486581

Synonym: Sala_1092

Alternate gene names: NA

Gene position: 1121459-1122292 (Clockwise)

Preceding gene: 103486578

Following gene: 103486584

Centisome position: 33.52

GC content: 63.67

Gene sequence:

>834_bases
ATGAAATTCGTAGCTCTCCTCGCCGCCACGGCGGCATCCGTTCTGGCCGTTCCAGCCGTTGCTCAGGACAATCGGGATCC
GTCTCGGGACTTCGACGGTCCCTATATCTCGATCGGCGGCGGCGCCACGCTGCAGGGCAACGATCGCGGCGAAACTTTGG
TGTTCGACACCGACCGTGACGGCACCTATGGCGACACCGTCAATACCGCAGGCGGAACCAATGCCTTTTCGCCCGGCTTC
TGCAACGGCGCTGCGACGAGCACCGCCAATGTCGGCTGCCGCAACGACAAGGACGGTCCGGAGTTTTTCGGGCGCCTCGG
TTATGACAAGCGCATGGGCAATTTCGTGCTCGGCGCGGTGGTCGAGGGCGGCCACAGCGTCGCGCGCGACAGTGTTTCGG
GCTTTTCGACCACACCGGCGAGTTACACCATGAGCCGCGAGGCCGACTATCAGGCGAACGCGCGTCTGCGCGCAGGATAC
ACGCCGGGCGGCGGCGCGCTTTTCTATGTCACCGGCGGCGGCGCCTATGCGCGGCTCGACAACAGGTTCACGACCACGAA
CACCGCGAACAGCTTTGCCGACAACGGCAAGACGAATGCGTGGGGTTACACCGTCGGCGGCGGTGCAGAACTGATGGTCA
CCAACAACATCGGCATCGGGCTCGAATATCTCTACACCGACGTCAAGGACAAGGACTATGTCGTCAATGTCGGCCCGGGA
AGCGCGCCGGCGACCAATCCGTTCCTGCTGAACGGCGGCGGCACCGACATCCGCCGCAGCGATCCGCATTTCCGCACGCA
CAGCGTTCGCGGGACGCTGAGTTATCGCTTCTGA

Upstream 100 bases:

>100_bases
GCGGCATCGATTCACCGCATTCCGGCCTGCGCAAGGAACTTTCCGCGTCACCACCGGGTTTGGATGGCGACTGCAAGGTC
ATAAAAAATGGAGTAAAAAC

Downstream 100 bases:

>100_bases
CCTTTCGGGAGCAAAAAGGAAGGCGCCGGGTCGTTGATCCGGCGCCTTTCGTCTATCCGGCGTCCGGCGCCGGAAAAATC
GCGAAATTGCCGTTGGCGCT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKFVALLAATAASVLAVPAVAQDNRDPSRDFDGPYISIGGGATLQGNDRGETLVFDTDRDGTYGDTVNTAGGTNAFSPGF
CNGAATSTANVGCRNDKDGPEFFGRLGYDKRMGNFVLGAVVEGGHSVARDSVSGFSTTPASYTMSREADYQANARLRAGY
TPGGGALFYVTGGGAYARLDNRFTTTNTANSFADNGKTNAWGYTVGGGAELMVTNNIGIGLEYLYTDVKDKDYVVNVGPG
SAPATNPFLLNGGGTDIRRSDPHFRTHSVRGTLSYRF

Sequences:

>Translated_277_residues
MKFVALLAATAASVLAVPAVAQDNRDPSRDFDGPYISIGGGATLQGNDRGETLVFDTDRDGTYGDTVNTAGGTNAFSPGF
CNGAATSTANVGCRNDKDGPEFFGRLGYDKRMGNFVLGAVVEGGHSVARDSVSGFSTTPASYTMSREADYQANARLRAGY
TPGGGALFYVTGGGAYARLDNRFTTTNTANSFADNGKTNAWGYTVGGGAELMVTNNIGIGLEYLYTDVKDKDYVVNVGPG
SAPATNPFLLNGGGTDIRRSDPHFRTHSVRGTLSYRF
>Mature_277_residues
MKFVALLAATAASVLAVPAVAQDNRDPSRDFDGPYISIGGGATLQGNDRGETLVFDTDRDGTYGDTVNTAGGTNAFSPGF
CNGAATSTANVGCRNDKDGPEFFGRLGYDKRMGNFVLGAVVEGGHSVARDSVSGFSTTPASYTMSREADYQANARLRAGY
TPGGGALFYVTGGGAYARLDNRFTTTNTANSFADNGKTNAWGYTVGGGAELMVTNNIGIGLEYLYTDVKDKDYVVNVGPG
SAPATNPFLLNGGGTDIRRSDPHFRTHSVRGTLSYRF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29022; Mature: 29022

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVALLAATAASVLAVPAVAQDNRDPSRDFDGPYISIGGGATLQGNDRGETLVFDTDRD
CHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCEEEECCCEEEECCCCCCEEEEECCCC
GTYGDTVNTAGGTNAFSPGFCNGAATSTANVGCRNDKDGPEFFGRLGYDKRMGNFVLGAV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHCCCEEEEEE
VEGGHSVARDSVSGFSTTPASYTMSREADYQANARLRAGYTPGGGALFYVTGGGAYARLD
ECCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCEEEEEECCCEEEEEC
NRFTTTNTANSFADNGKTNAWGYTVGGGAELMVTNNIGIGLEYLYTDVKDKDYVVNVGPG
CEEEECCCCCHHHCCCCCCCCEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCC
SAPATNPFLLNGGGTDIRRSDPHFRTHSVRGTLSYRF
CCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECC
>Mature Secondary Structure
MKFVALLAATAASVLAVPAVAQDNRDPSRDFDGPYISIGGGATLQGNDRGETLVFDTDRD
CHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCEEEECCCEEEECCCCCCEEEEECCCC
GTYGDTVNTAGGTNAFSPGFCNGAATSTANVGCRNDKDGPEFFGRLGYDKRMGNFVLGAV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHCCCEEEEEE
VEGGHSVARDSVSGFSTTPASYTMSREADYQANARLRAGYTPGGGALFYVTGGGAYARLD
ECCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCEEEEEECCCEEEEEC
NRFTTTNTANSFADNGKTNAWGYTVGGGAELMVTNNIGIGLEYLYTDVKDKDYVVNVGPG
CEEEECCCCCHHHCCCCCCCCEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCC
SAPATNPFLLNGGGTDIRRSDPHFRTHSVRGTLSYRF
CCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA