Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is ampG [H]

Identifier: 103486549

GI number: 103486549

Start: 1092389

End: 1093792

Strand: Direct

Name: ampG [H]

Synonym: Sala_1060

Alternate gene names: 103486549

Gene position: 1092389-1093792 (Clockwise)

Preceding gene: 103486548

Following gene: 103486558

Centisome position: 32.66

GC content: 63.89

Gene sequence:

>1404_bases
TTGCCGCAGGATGTGACAACGGCGCCGCCGCAAGACTGGTGGCACAGCTTCCGCCCCTATCTGGAGCGTGCGCCGCTCGC
GGCGTTGCTGCTCGGCATATCATCCGGTTTTCCCTACGCCATGATCGGCGCGACGCTCACGACGCGGCTGTCGCAGGACG
GATTCCAGAAATCTTCGATCACCGCCTTTTCACTCGCTTTCCTCGTCTATAATTTCAAACCGCTCTGGGCGTGGCTTGTC
GACGCGGTGCGCCTGCCGGGCGCGCGGTTCGTCGGCCAGCGCGTCAGCTGGATGATCCTTGCCGCCGCGCTTGTGATATT
GGCGGTCGCAAACCTCGCGATGGTCGACCCCGCGCGTGTCGGCCAGTCGCCCGTCGGGCAGATGATGATCTGGCTCGGCC
TCGGCCGCGAGGGCGAATTTGCTGCCCTTTTCGAAATGGCGATGGGGGCGGTGCTCGTCGGACTCGCCGGCGCGACGTTC
GACATCGTGATCGACGCCTATCGGATCGAGATATTGAAGCCCGAACAGCTTGGCGTCGGGTCGGGCATGTCGCAATATGG
TTGGCGCATCGGATCGGCGGGGGCGGGCGCCATCGCGCTGTTCGTGGCGGCACGCCAAGGCTGGGAAGCGGCGTATCTGG
TTTGCGCGCTGCTCGCGCTACCGGCGGTGCTTGCGGCTCTGTGGGTCGGCGAGCCCGAGCGCCACCGCGAGGCGGTGCAG
CGCGAGGGACGACCGGGCATCATCGCGGGTATCGTCGGCCCCTTCGCCGAATTTTTCAGCCGCCACGGCGCGTGGCTGGT
GCTGCTGTTTATCCTGCTCCACAAAATCGGCGACACGCTCGCCAATCTGACGCTAAGGCTGCTGCTCGACGATCTGGGGT
TCAGCAATGACGAGATTGCCATTTATGACGTCGGGATCGGCTTCTGGGCCTATCTGATCGGCATTTTTATCGGCGGCGCT
CTCTATGCGCGGCTCGGCATGAAGAAATCGGTGCTGCTCAGCCTCATCCTGATGGCGATCAGCAATTTCAGCTTCGCGCT
GCTCGCCGCCGCCGGGCACAGCAATTGGGGTCTCGCAGGCGCTATCGCGTTCGAAAATATCGCCAGCGGGATCGGGGGCG
TTGTCGTCGTCGCCTATTTCTCGGCGCTATGCGACCTTCGCTTTACCGCCGCCCATTATGCACTCATCAGTTCGGCGGCC
AGTATCGTCGGTCGCTTTCTGACCGGCACGACAGCGGGCGCGATGATGGATGCGTTCGGCAATGTGACTTTCTATCTGCT
CACCGTGGCGGCGGCTTTGCCGGGCATCATCCTTTTCTGGCTGATGATGCGCAGCGGGCTGGTCGACCTGTCGGTGGGCA
CGGCGGGCAGGGCAGGAAGCGCTGCGAAAGAGCCGGCCGCCTGA

Upstream 100 bases:

>100_bases
GTGGGCGGGTCAATTACCCGCTTCCAATTTGGCAGGGAGGCTTTAGGCCCGTGACCTGGGTGCTGCGCCGGTCCTCGGCC
GCGCCGGGGAGACGAACGAT

Downstream 100 bases:

>100_bases
TGATTCATTCGGGCACCTCGCCATTCGCGGCAAGGACTTCGCCCGCGAGATAGAGCGAGCCGCAGATGAGGACGTCGCCG
CGCGCGTCCGCAAGCTGGCG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MPQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSITAFSLAFLVYNFKPLWAWLV
DAVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARVGQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATF
DIVIDAYRIEILKPEQLGVGSGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQ
REGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIAIYDVGIGFWAYLIGIFIGGA
LYARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAGAIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAA
SIVGRFLTGTTAGAMMDAFGNVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA

Sequences:

>Translated_467_residues
MPQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSITAFSLAFLVYNFKPLWAWLV
DAVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARVGQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATF
DIVIDAYRIEILKPEQLGVGSGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQ
REGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIAIYDVGIGFWAYLIGIFIGGA
LYARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAGAIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAA
SIVGRFLTGTTAGAMMDAFGNVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA
>Mature_466_residues
PQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSITAFSLAFLVYNFKPLWAWLVD
AVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARVGQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATFD
IVIDAYRIEILKPEQLGVGSGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQR
EGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIAIYDVGIGFWAYLIGIFIGGAL
YARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAGAIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAAS
IVGRFLTGTTAGAMMDAFGNVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA

Specific function: Probably acts as a permease in the beta-lactamase induction system and in peptidoglycan recycling [H]

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786636, Length=421, Percent_Identity=33.2541567695962, Blast_Score=202, Evalue=4e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004752
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 49569; Mature: 49438

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSI
CCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHH
TAFSLAFLVYNFKPLWAWLVDAVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARV
HHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
GQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATFDIVIDAYRIEILKPEQLGVG
CCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEHHEEEECCHHCCCC
SGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQ
CCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
REGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIA
HCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IYDVGIGFWAYLIGIFIGGALYARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAG
EEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
AIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAASIVGRFLTGTTAGAMMDAFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
NVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PQDVTTAPPQDWWHSFRPYLERAPLAALLLGISSGFPYAMIGATLTTRLSQDGFQKSSI
CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHH
TAFSLAFLVYNFKPLWAWLVDAVRLPGARFVGQRVSWMILAAALVILAVANLAMVDPARV
HHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
GQSPVGQMMIWLGLGREGEFAALFEMAMGAVLVGLAGATFDIVIDAYRIEILKPEQLGVG
CCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEHHEEEECCHHCCCC
SGMSQYGWRIGSAGAGAIALFVAARQGWEAAYLVCALLALPAVLAALWVGEPERHREAVQ
CCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
REGRPGIIAGIVGPFAEFFSRHGAWLVLLFILLHKIGDTLANLTLRLLLDDLGFSNDEIA
HCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IYDVGIGFWAYLIGIFIGGALYARLGMKKSVLLSLILMAISNFSFALLAAAGHSNWGLAG
EEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
AIAFENIASGIGGVVVVAYFSALCDLRFTAAHYALISSAASIVGRFLTGTTAGAMMDAFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
NVTFYLLTVAAALPGIILFWLMMRSGLVDLSVGTAGRAGSAAKEPAA
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]