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The map label for this gene is rlpA [H]

Identifier: 103486545

GI number: 103486545

Start: 1089732

End: 1090289

Strand: Direct

Name: rlpA [H]

Synonym: Sala_1056

Alternate gene names: 103486545

Gene position: 1089732-1090289 (Clockwise)

Preceding gene: 103486543

Following gene: 103486548

Centisome position: 32.58

GC content: 72.22

Gene sequence:

>558_bases
ATGCGGCGACATTCGGGAATCCGGACGTCGGGAACGGCGGTGATGCTTCTGGCGCTTGCCGCCTGCGCCGGCGGCGGTTA
CCGCCCGGTGGCCGACACGCCCGTACGGATCGGGCCGGCCTATACGATCCGTGGCGCCACCTATGTTCCTGCCGCCGCGC
CCGACTATGACGCGGTGGGTTATGCGAGCTGGTACGGAAGCGAGTCGGGCGACCGGACGGCGAACGGTGAGCGGTTCCGT
CCCGACTGGATCACTGCCGCGCACACAACCCTGCCGCTGCCAACCTATGTCGAGGTGACCGCGCTCGATACCGGGCGGCG
GATCATCGTGCGCGTCAACGACCGCGGCCCCTTCGCGGGGCGCGGGCGGATCATCGACCTGTCGCGCGGCGCCGCCGAGG
CGCTGGGGTTGCGGGCGCAGGGTCATGCGCCGGTGCGCGTGCGCCGCGTCGAGCCGTCGGAAAAGGACCGCAAGCGGCTG
CGCGAGGGCAAGGCCGCTGCGGCGCTGGCGCCCGTGCCTGCGGACGAATTGCAGCGGCTGCGCGCGCGGCTCCGTTAG

Upstream 100 bases:

>100_bases
GGCAATTTTGAACGCGCGCATACCCGCGCTCAATTGCGTGGCAATCAGCCAGTCGACAGGAAGGTGCGGTTTGTTAAAGA
AGGGGTGCCGAGGGACGTGG

Downstream 100 bases:

>100_bases
AGTGGGCGCAGGAGCGTGAGTTTCGCCTTGCCGACTCTGCGTTCGGCGTCGATCTCGAAACCCGCGATCTCGACCGACTC
GCGCTCGCCCGTCTCGATCG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRRHSGIRTSGTAVMLLALAACAGGGYRPVADTPVRIGPAYTIRGATYVPAAAPDYDAVGYASWYGSESGDRTANGERFR
PDWITAAHTTLPLPTYVEVTALDTGRRIIVRVNDRGPFAGRGRIIDLSRGAAEALGLRAQGHAPVRVRRVEPSEKDRKRL
REGKAAAALAPVPADELQRLRARLR

Sequences:

>Translated_185_residues
MRRHSGIRTSGTAVMLLALAACAGGGYRPVADTPVRIGPAYTIRGATYVPAAAPDYDAVGYASWYGSESGDRTANGERFR
PDWITAAHTTLPLPTYVEVTALDTGRRIIVRVNDRGPFAGRGRIIDLSRGAAEALGLRAQGHAPVRVRRVEPSEKDRKRL
REGKAAAALAPVPADELQRLRARLR
>Mature_185_residues
MRRHSGIRTSGTAVMLLALAACAGGGYRPVADTPVRIGPAYTIRGATYVPAAAPDYDAVGYASWYGSESGDRTANGERFR
PDWITAAHTTLPLPTYVEVTALDTGRRIIVRVNDRGPFAGRGRIIDLSRGAAEALGLRAQGHAPVRVRRVEPSEKDRKRL
REGKAAAALAPVPADELQRLRARLR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=81, Percent_Identity=50.6172839506173, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 19954; Mature: 19954

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRHSGIRTSGTAVMLLALAACAGGGYRPVADTPVRIGPAYTIRGATYVPAAAPDYDAVG
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCEEEECCCEECCCCCCCCCCCC
YASWYGSESGDRTANGERFRPDWITAAHTTLPLPTYVEVTALDTGRRIIVRVNDRGPFAG
EEHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCC
RGRIIDLSRGAAEALGLRAQGHAPVRVRRVEPSEKDRKRLREGKAAAALAPVPADELQRL
CCEEEECCCCCHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCCHHHHHHH
RARLR
HHHCC
>Mature Secondary Structure
MRRHSGIRTSGTAVMLLALAACAGGGYRPVADTPVRIGPAYTIRGATYVPAAAPDYDAVG
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCEEEECCCEECCCCCCCCCCCC
YASWYGSESGDRTANGERFRPDWITAAHTTLPLPTYVEVTALDTGRRIIVRVNDRGPFAG
EEHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCC
RGRIIDLSRGAAEALGLRAQGHAPVRVRRVEPSEKDRKRLREGKAAAALAPVPADELQRL
CCEEEECCCCCHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCCHHHHHHH
RARLR
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA