Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486539

Identifier: 103486539

GI number: 103486539

Start: 1084354

End: 1084872

Strand: Direct

Name: 103486539

Synonym: Sala_1050

Alternate gene names: NA

Gene position: 1084354-1084872 (Clockwise)

Preceding gene: 103486530

Following gene: 103486540

Centisome position: 32.42

GC content: 63.39

Gene sequence:

>519_bases
GTGCTGACGGCGGCATTCCTCTGGATCATGGTCGCCCCCGCGGCCGATGTGGCATCGCCTGCTCCCGTTCCCGAGGCGTT
GACGCCCGCCGTCGTCCCCCTGGCGCCCGACTCCCCGCTCTCCTTCTGGCAGGTGGTGATCGAACAGCAGATGATCATCC
GCGTGCCTGCGCAGCGGTCGCAGCTCAACAATTTCGCCGCCCCGCCGCCGCCCCGCGTCGCCGACGTCCCCATTGTATGG
AAAGAAAAAAAAGCTCCGAAATGCGTTGCCATGCGCAACATCGTCGGATTGGATGCGGTGCAGCGCGACAGCATCGACCT
GATCACGCGGCAGAAACAGCGGTTGCGGGCACAGCTCAATCGCGGGTGCCGCGCGCTCGATTTTTATGCGGGCTTTTACA
TGCAGGGGAGCAAGGACGGAAAGCTTTGTGAAGATCGAGACGAAATCCACGCGCGCACGGGCGCGAAGTGCGAGGTTGAC
AAGTTTCGGCTGCTGGTTCCGGTGCGCGACGGCGATTGA

Upstream 100 bases:

>100_bases
CGATCGACAAATAATGTCTTTACATCCGGCGGGGATGGATGCGGGAGCGGCGAGTGAGCAGCATTATGGGTGACGATGTG
CGAACGGCGGTGGCGTGGCG

Downstream 100 bases:

>100_bases
GCGTCTTTTTCACCGGCATTTCTTGACTTTTCCTGCTTCTTTGCCCAATGGCCGCGGCAGCGCTTGCCTGCGTGGGCGGC
TGGGCGCACCCTTATCTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MLTAAFLWIMVAPAADVASPAPVPEALTPAVVPLAPDSPLSFWQVVIEQQMIIRVPAQRSQLNNFAAPPPPRVADVPIVW
KEKKAPKCVAMRNIVGLDAVQRDSIDLITRQKQRLRAQLNRGCRALDFYAGFYMQGSKDGKLCEDRDEIHARTGAKCEVD
KFRLLVPVRDGD

Sequences:

>Translated_172_residues
MLTAAFLWIMVAPAADVASPAPVPEALTPAVVPLAPDSPLSFWQVVIEQQMIIRVPAQRSQLNNFAAPPPPRVADVPIVW
KEKKAPKCVAMRNIVGLDAVQRDSIDLITRQKQRLRAQLNRGCRALDFYAGFYMQGSKDGKLCEDRDEIHARTGAKCEVD
KFRLLVPVRDGD
>Mature_172_residues
MLTAAFLWIMVAPAADVASPAPVPEALTPAVVPLAPDSPLSFWQVVIEQQMIIRVPAQRSQLNNFAAPPPPRVADVPIVW
KEKKAPKCVAMRNIVGLDAVQRDSIDLITRQKQRLRAQLNRGCRALDFYAGFYMQGSKDGKLCEDRDEIHARTGAKCEVD
KFRLLVPVRDGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19072; Mature: 19072

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTAAFLWIMVAPAADVASPAPVPEALTPAVVPLAPDSPLSFWQVVIEQQMIIRVPAQRS
CHHHHEEHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHEEECCCHHH
QLNNFAAPPPPRVADVPIVWKEKKAPKCVAMRNIVGLDAVQRDSIDLITRQKQRLRAQLN
HHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHH
RGCRALDFYAGFYMQGSKDGKLCEDRDEIHARTGAKCEVDKFRLLVPVRDGD
CCCEEEEHHHCEEEECCCCCCCCCCHHHHHHCCCCEEEECEEEEEEEECCCC
>Mature Secondary Structure
MLTAAFLWIMVAPAADVASPAPVPEALTPAVVPLAPDSPLSFWQVVIEQQMIIRVPAQRS
CHHHHEEHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHEEECCCHHH
QLNNFAAPPPPRVADVPIVWKEKKAPKCVAMRNIVGLDAVQRDSIDLITRQKQRLRAQLN
HHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHH
RGCRALDFYAGFYMQGSKDGKLCEDRDEIHARTGAKCEVDKFRLLVPVRDGD
CCCEEEEHHHCEEEECCCCCCCCCCHHHHHHCCCCEEEECEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA