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The map label for this gene is ygbL [C]

Identifier: 103486527

GI number: 103486527

Start: 1071842

End: 1072606

Strand: Reverse

Name: ygbL [C]

Synonym: Sala_1038

Alternate gene names: 103486527

Gene position: 1072606-1071842 (Counterclockwise)

Preceding gene: 103486529

Following gene: 103486526

Centisome position: 32.06

GC content: 59.61

Gene sequence:

>765_bases
ATGGCCACCCAGCTCAAGCGCAACAGCAAATATAGCGAAGCCGAATGGACCGCACGGCAGGAACTCGCCGCCTGCTACCG
CATCTTTGCGATGATGCGCTGGGACGAGCTGATCTTCAACCACATCACGGTGAAGGTGCCCGATCAGGACGGCGCCTTCC
TCATCAACCCCTATGGCATGCACTTCAGCGAGGTCACTGCATCGAGCCTCATCAAGATCGACATCGACGGCAACAAGCTC
GACGAGGATAATCCCTGGCACGTCAACAAGGCGGGTTTCGTCCAGCACAGCCTGTTCCACCGCATATTGCCCGACGCGCA
CGCGATCATCCACACCCACACCACCGCGACGATGGCCGTATGCGGGCTCGAGGGAGGACTCCAACCGACCAACTTCTATG
CCTGCAACTTCATGGGGCAGCTCGCCTATCATGATTTCGAGGGTGTGACGGTACGCGAGGAAGAGGGCGAGCGGCTGGTC
AGGAATCTCGGCGACAAGCGCATCCTGATGCTGCGCAATCACGGCCCCGTCGTGATGGGCAAATCGCTCACCGACGCCTT
CATCAAATATTGGGCGCTCCAGCGCGCATGCGAGATCCAGCTCGCGACGATGAGCATGGGCAAGCCGATCCTTGTCGACG
AAGAGGTCATCAAGGTCCACCAGCGCGACCTTTATATGGCGGCGATCCCCGGCCAGTCGGGCAAGGCCGAGTTCGACGCG
ATGGTACGCAAGGTCGACAAGATCGACACAAGTTGGCGTGACTAA

Upstream 100 bases:

>100_bases
CCGCTCCGCACACGCCCTGTGTCCGCACGCGGGATTGTGCCGAACATGCGCCTTGTGGCATAAGTAGCAGGACGAAACCA
ATCATCCAAGGGACAGGAAC

Downstream 100 bases:

>100_bases
TCCGCTCGCTGCGCTAACAGGGGCGGCATGACGCGATTCTCGGTCAACGACCGTCCGGTCGAATATCGCATGGAGCCCGA
AACCCCGCTGCTTTGGGCGC

Product: aldolase II superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MATQLKRNSKYSEAEWTARQELAACYRIFAMMRWDELIFNHITVKVPDQDGAFLINPYGMHFSEVTASSLIKIDIDGNKL
DEDNPWHVNKAGFVQHSLFHRILPDAHAIIHTHTTATMAVCGLEGGLQPTNFYACNFMGQLAYHDFEGVTVREEEGERLV
RNLGDKRILMLRNHGPVVMGKSLTDAFIKYWALQRACEIQLATMSMGKPILVDEEVIKVHQRDLYMAAIPGQSGKAEFDA
MVRKVDKIDTSWRD

Sequences:

>Translated_254_residues
MATQLKRNSKYSEAEWTARQELAACYRIFAMMRWDELIFNHITVKVPDQDGAFLINPYGMHFSEVTASSLIKIDIDGNKL
DEDNPWHVNKAGFVQHSLFHRILPDAHAIIHTHTTATMAVCGLEGGLQPTNFYACNFMGQLAYHDFEGVTVREEEGERLV
RNLGDKRILMLRNHGPVVMGKSLTDAFIKYWALQRACEIQLATMSMGKPILVDEEVIKVHQRDLYMAAIPGQSGKAEFDA
MVRKVDKIDTSWRD
>Mature_253_residues
ATQLKRNSKYSEAEWTARQELAACYRIFAMMRWDELIFNHITVKVPDQDGAFLINPYGMHFSEVTASSLIKIDIDGNKLD
EDNPWHVNKAGFVQHSLFHRILPDAHAIIHTHTTATMAVCGLEGGLQPTNFYACNFMGQLAYHDFEGVTVREEEGERLVR
NLGDKRILMLRNHGPVVMGKSLTDAFIKYWALQRACEIQLATMSMGKPILVDEEVIKVHQRDLYMAAIPGQSGKAEFDAM
VRKVDKIDTSWRD

Specific function: Unknown

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family [H]

Homologues:

Organism=Homo sapiens, GI29826323, Length=251, Percent_Identity=39.4422310756972, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI29826325, Length=251, Percent_Identity=39.4422310756972, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI29826321, Length=251, Percent_Identity=39.4422310756972, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI29826319, Length=251, Percent_Identity=39.4422310756972, Blast_Score=166, Evalue=2e-41,
Organism=Homo sapiens, GI89276787, Length=250, Percent_Identity=34, Blast_Score=137, Evalue=6e-33,
Organism=Homo sapiens, GI297307160, Length=250, Percent_Identity=34, Blast_Score=137, Evalue=7e-33,
Organism=Homo sapiens, GI9257190, Length=250, Percent_Identity=34, Blast_Score=137, Evalue=7e-33,
Organism=Homo sapiens, GI297307158, Length=250, Percent_Identity=34, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI9257192, Length=250, Percent_Identity=34, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI9951927, Length=199, Percent_Identity=34.1708542713568, Blast_Score=128, Evalue=4e-30,
Organism=Homo sapiens, GI62912453, Length=199, Percent_Identity=34.1708542713568, Blast_Score=128, Evalue=4e-30,
Organism=Homo sapiens, GI9943848, Length=199, Percent_Identity=34.1708542713568, Blast_Score=128, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI115533216, Length=205, Percent_Identity=39.5121951219512, Blast_Score=156, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI115533218, Length=205, Percent_Identity=39.5121951219512, Blast_Score=156, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI71989555, Length=217, Percent_Identity=33.1797235023041, Blast_Score=128, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71989560, Length=217, Percent_Identity=33.1797235023041, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI71989541, Length=217, Percent_Identity=33.1797235023041, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI71989550, Length=217, Percent_Identity=33.1797235023041, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI71989544, Length=217, Percent_Identity=33.1797235023041, Blast_Score=128, Evalue=3e-30,
Organism=Drosophila melanogaster, GI281363755, Length=212, Percent_Identity=33.0188679245283, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI281363751, Length=212, Percent_Identity=33.0188679245283, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24655690, Length=212, Percent_Identity=33.0188679245283, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI281363763, Length=212, Percent_Identity=33.0188679245283, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI281363757, Length=212, Percent_Identity=33.0188679245283, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI17136738, Length=212, Percent_Identity=33.0188679245283, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24655685, Length=212, Percent_Identity=33.0188679245283, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI281363761, Length=212, Percent_Identity=33.0188679245283, Blast_Score=121, Evalue=5e-28,
Organism=Drosophila melanogaster, GI281363759, Length=212, Percent_Identity=33.0188679245283, Blast_Score=121, Evalue=5e-28,
Organism=Drosophila melanogaster, GI281363753, Length=212, Percent_Identity=33.0188679245283, Blast_Score=121, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: NA

Molecular weight: Translated: 28915; Mature: 28783

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQLKRNSKYSEAEWTARQELAACYRIFAMMRWDELIFNHITVKVPDQDGAFLINPYGM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCEEECCCCC
HFSEVTASSLIKIDIDGNKLDEDNPWHVNKAGFVQHSLFHRILPDAHAIIHTHTTATMAV
CHHHHCCCEEEEEEECCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHEEE
CGLEGGLQPTNFYACNFMGQLAYHDFEGVTVREEEGERLVRNLGDKRILMLRNHGPVVMG
ECCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCEEEEEECCCCEEEC
KSLTDAFIKYWALQRACEIQLATMSMGKPILVDEEVIKVHQRDLYMAAIPGQSGKAEFDA
CHHHHHHHHHHHHHHHHEEEEEECCCCCCEEECHHHHHHHHCCEEEEECCCCCCCHHHHH
MVRKVDKIDTSWRD
HHHHHHHCCCCCCC
>Mature Secondary Structure 
ATQLKRNSKYSEAEWTARQELAACYRIFAMMRWDELIFNHITVKVPDQDGAFLINPYGM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCEEECCCCC
HFSEVTASSLIKIDIDGNKLDEDNPWHVNKAGFVQHSLFHRILPDAHAIIHTHTTATMAV
CHHHHCCCEEEEEEECCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHEEE
CGLEGGLQPTNFYACNFMGQLAYHDFEGVTVREEEGERLVRNLGDKRILMLRNHGPVVMG
ECCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCEEEEEECCCCEEEC
KSLTDAFIKYWALQRACEIQLATMSMGKPILVDEEVIKVHQRDLYMAAIPGQSGKAEFDA
CHHHHHHHHHHHHHHHHEEEEEECCCCCCEEECHHHHHHHHCCEEEEECCCCCCCHHHHH
MVRKVDKIDTSWRD
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]