Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486505

Identifier: 103486505

GI number: 103486505

Start: 1047965

End: 1049482

Strand: Direct

Name: 103486505

Synonym: Sala_1016

Alternate gene names: NA

Gene position: 1047965-1049482 (Clockwise)

Preceding gene: 103486504

Following gene: 103486516

Centisome position: 31.33

GC content: 64.82

Gene sequence:

>1518_bases
ATGTCTGTTCCTATCGGGGCATCGCTCCTGCCCCTCGCGACGCTGATCGCCGCCTGCGCCGCCGCACCCGCGCCCTCCGC
GCCCGTGCCGCCCGCTCCTGCGGTGCTGGCACCGATGAGCGAGGCGGCTTTTACCGAAGAATTGACCGAGCGGACCTTCC
GCTATTTCTGGGACACGACCGACACGAAACGCTGTCTCGCGCCCGACCGCTGGCCGAGCAATCCCTTTTCGTCGATCGCG
GCGACGGGCTTTGCGCTCACCGCCTATGGCATCGGCGCCGAGCGCGGCTATGTGACGCGCGAGGCCGCGGCCGAGCGGAC
GCGCGACTGCCTGCGCTTTTACTGGACGGCACCGCAGGGCCCCGCCGTCACCGGCATGACGGGGCACAAGGGGTTTTTCT
ATCATTTCCTGAACAATGAGGACGGCACGCGGCGCGGCAAGACCGAACTGTCGACGGTCGATACGTCGCTGCTGCTTGGC
GGTGTCTTGTTCGCGCAAAGCTATTACGATCGCGAGACGCCGGTCGAGACCGAGATTCGCGACCTTGCGGAAAAGATCTA
CCGCCGCGTCGACTGGACCTTTGTTCAGCGCGAAAATAGCAGCATTCCGTCTGCCAACAGCGGCGGGCGGAAAGCGATCG
CGATGGGCTGGTATCCCGAACGCGGCGAGGGCGGCGATTTCGGGACGCACGACTGGGTCGGCTATAATGAGGGGATGCTC
GTCTATATCCTCGCGCTCGGGTCGCCGACGCACCCCGTCGGCACGGACGCGTGGGAGGAGGGCTGGGCCGCCGATCTCGA
AAAGGATTGGGGCAGCTATTACGGGCAGGAACACCTCCAGTTCGAGCCGCTGTTCGGGCACCAGTACAGCCATGTCTGGG
TCGATTTCCGCGGCATCCGTGATGCGTTCATGCGCGGCAAGGGCATCGACTATTTCGAGAACAGCCGCCGTGCGACGCTG
GCGCAGCGCGCCTATGGCGCCGACAATCCGAACAAATGGGTGGGGTATAGCGCCGACATCTGGGGCTGGACCGCGTCGGA
CGGCCCCGGCTATTCAAAGGGGCGGTACAGCGTGAACGGCACGCCGCGCGACTTCAACGGTTATATGGCGCGCGGCGTCA
GCGCGATCCGCGTCGTCGACGACGGCACGATCGTCCCGACCGCGGCGGGCGGCTCGATCCCCTTTGCGCCCGAAGTGACG
ATCCCGGCGTTGATGACGATGCGCACGACATTCGGGCCGCGCCTCTATACGCGCTATGGCTTTAAGGACGCGATCAACCC
CAGCTTCACCTTCACCGATTTCGGATCGAAGTCGGGCGAGGTCGATCCGGTCCACGGCTGGGTCGCGCGCGACTATATCG
GCATCGACCAGGGACCGATTCTCGCGATGATGGAAAATCATCGCAGCGGGCTGGTGTGGAAGGTGATGCGCAGGAATCGG
CATATCGTGCGCGGACTGAAACGCATCGGCTTCACCGGCGGCTGGCTCGATCAGGCGCAGCCAGCAAAGGGCGAATAG

Upstream 100 bases:

>100_bases
GGTAAAGGTCTCGGCCGGTTTCTCTTTCTGATCGGCTGATACGGACGCCCGGCCTGCACCCCCTCCCGCCGGTCGGGCGT
CATCCTTGTTGGAGTATCGA

Downstream 100 bases:

>100_bases
GCCGTTTTTAGAGCGGCGTAAGGGTCCAGCGCACTTCGTCCTTCACCACCCCGGATGCAAAGGTCGCGCGCGCCGTCACC
ACATTGTCGCCGGGGCGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MSVPIGASLLPLATLIAACAAAPAPSAPVPPAPAVLAPMSEAAFTEELTERTFRYFWDTTDTKRCLAPDRWPSNPFSSIA
ATGFALTAYGIGAERGYVTREAAAERTRDCLRFYWTAPQGPAVTGMTGHKGFFYHFLNNEDGTRRGKTELSTVDTSLLLG
GVLFAQSYYDRETPVETEIRDLAEKIYRRVDWTFVQRENSSIPSANSGGRKAIAMGWYPERGEGGDFGTHDWVGYNEGML
VYILALGSPTHPVGTDAWEEGWAADLEKDWGSYYGQEHLQFEPLFGHQYSHVWVDFRGIRDAFMRGKGIDYFENSRRATL
AQRAYGADNPNKWVGYSADIWGWTASDGPGYSKGRYSVNGTPRDFNGYMARGVSAIRVVDDGTIVPTAAGGSIPFAPEVT
IPALMTMRTTFGPRLYTRYGFKDAINPSFTFTDFGSKSGEVDPVHGWVARDYIGIDQGPILAMMENHRSGLVWKVMRRNR
HIVRGLKRIGFTGGWLDQAQPAKGE

Sequences:

>Translated_505_residues
MSVPIGASLLPLATLIAACAAAPAPSAPVPPAPAVLAPMSEAAFTEELTERTFRYFWDTTDTKRCLAPDRWPSNPFSSIA
ATGFALTAYGIGAERGYVTREAAAERTRDCLRFYWTAPQGPAVTGMTGHKGFFYHFLNNEDGTRRGKTELSTVDTSLLLG
GVLFAQSYYDRETPVETEIRDLAEKIYRRVDWTFVQRENSSIPSANSGGRKAIAMGWYPERGEGGDFGTHDWVGYNEGML
VYILALGSPTHPVGTDAWEEGWAADLEKDWGSYYGQEHLQFEPLFGHQYSHVWVDFRGIRDAFMRGKGIDYFENSRRATL
AQRAYGADNPNKWVGYSADIWGWTASDGPGYSKGRYSVNGTPRDFNGYMARGVSAIRVVDDGTIVPTAAGGSIPFAPEVT
IPALMTMRTTFGPRLYTRYGFKDAINPSFTFTDFGSKSGEVDPVHGWVARDYIGIDQGPILAMMENHRSGLVWKVMRRNR
HIVRGLKRIGFTGGWLDQAQPAKGE
>Mature_504_residues
SVPIGASLLPLATLIAACAAAPAPSAPVPPAPAVLAPMSEAAFTEELTERTFRYFWDTTDTKRCLAPDRWPSNPFSSIAA
TGFALTAYGIGAERGYVTREAAAERTRDCLRFYWTAPQGPAVTGMTGHKGFFYHFLNNEDGTRRGKTELSTVDTSLLLGG
VLFAQSYYDRETPVETEIRDLAEKIYRRVDWTFVQRENSSIPSANSGGRKAIAMGWYPERGEGGDFGTHDWVGYNEGMLV
YILALGSPTHPVGTDAWEEGWAADLEKDWGSYYGQEHLQFEPLFGHQYSHVWVDFRGIRDAFMRGKGIDYFENSRRATLA
QRAYGADNPNKWVGYSADIWGWTASDGPGYSKGRYSVNGTPRDFNGYMARGVSAIRVVDDGTIVPTAAGGSIPFAPEVTI
PALMTMRTTFGPRLYTRYGFKDAINPSFTFTDFGSKSGEVDPVHGWVARDYIGIDQGPILAMMENHRSGLVWKVMRRNRH
IVRGLKRIGFTGGWLDQAQPAKGE

Specific function: Unknown

COG id: COG5368

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55842; Mature: 55711

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00221 MIP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPIGASLLPLATLIAACAAAPAPSAPVPPAPAVLAPMSEAAFTEELTERTFRYFWDTT
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCC
DTKRCLAPDRWPSNPFSSIAATGFALTAYGIGAERGYVTREAAAERTRDCLRFYWTAPQG
CCCHHCCCCCCCCCHHHHHHHHCEEEEEECCCCCCCCEEHHHHHHHHHHHHHEEEECCCC
PAVTGMTGHKGFFYHFLNNEDGTRRGKTELSTVDTSLLLGGVLFAQSYYDRETPVETEIR
CEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
DLAEKIYRRVDWTFVQRENSSIPSANSGGRKAIAMGWYPERGEGGDFGTHDWVGYNEGML
HHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
VYILALGSPTHPVGTDAWEEGWAADLEKDWGSYYGQEHLQFEPLFGHQYSHVWVDFRGIR
EEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEEEEHHHH
DAFMRGKGIDYFENSRRATLAQRAYGADNPNKWVGYSADIWGWTASDGPGYSKGRYSVNG
HHHHCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCC
TPRDFNGYMARGVSAIRVVDDGTIVPTAAGGSIPFAPEVTIPALMTMRTTFGPRLYTRYG
CCCCCCHHHHCCCEEEEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHEECC
FKDAINPSFTFTDFGSKSGEVDPVHGWVARDYIGIDQGPILAMMENHRSGLVWKVMRRNR
CHHCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCH
HIVRGLKRIGFTGGWLDQAQPAKGE
HHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVPIGASLLPLATLIAACAAAPAPSAPVPPAPAVLAPMSEAAFTEELTERTFRYFWDTT
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCC
DTKRCLAPDRWPSNPFSSIAATGFALTAYGIGAERGYVTREAAAERTRDCLRFYWTAPQG
CCCHHCCCCCCCCCHHHHHHHHCEEEEEECCCCCCCCEEHHHHHHHHHHHHHEEEECCCC
PAVTGMTGHKGFFYHFLNNEDGTRRGKTELSTVDTSLLLGGVLFAQSYYDRETPVETEIR
CEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
DLAEKIYRRVDWTFVQRENSSIPSANSGGRKAIAMGWYPERGEGGDFGTHDWVGYNEGML
HHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
VYILALGSPTHPVGTDAWEEGWAADLEKDWGSYYGQEHLQFEPLFGHQYSHVWVDFRGIR
EEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEEEEHHHH
DAFMRGKGIDYFENSRRATLAQRAYGADNPNKWVGYSADIWGWTASDGPGYSKGRYSVNG
HHHHCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCC
TPRDFNGYMARGVSAIRVVDDGTIVPTAAGGSIPFAPEVTIPALMTMRTTFGPRLYTRYG
CCCCCCHHHHCCCEEEEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHEECC
FKDAINPSFTFTDFGSKSGEVDPVHGWVARDYIGIDQGPILAMMENHRSGLVWKVMRRNR
CHHCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCH
HIVRGLKRIGFTGGWLDQAQPAKGE
HHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA