| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is atsA [H]
Identifier: 103486502
GI number: 103486502
Start: 1040727
End: 1042274
Strand: Reverse
Name: atsA [H]
Synonym: Sala_1013
Alternate gene names: 103486502
Gene position: 1042274-1040727 (Counterclockwise)
Preceding gene: 103486503
Following gene: 103486501
Centisome position: 31.16
GC content: 61.82
Gene sequence:
>1548_bases ATGCCGATCGCCCTCGCGCTGCCGCTGGCCTTCGTCGCCGCGGCGGGCGCGCAGCCCCCTGCCCGTCCGAACATCGTCTT CATCATGTCGGACGATCATGCCTATCAGGCGATCTCGGCCTATGGGTCGGCGCTGTCGAAACTGGCGCCCACGCCGAACA TCGACCGGATCGCCAAAAATGGCGCGATCTTCACGCAAAGCTTTGTCGGCAATTCGCTGTGCGGCCCCAGCCGCGCGACG CTGCTCACCGGACGGCACAGCCACGCCCACGGGTTCCGGCAGAATGGCAACAGGTTCGACAACAGGGTCTGGGTCTGGCC GCGGGCGCTGTCGCAGGCGGGCTACGCCACCGCGATGTTCGGCAAATGGCACCTCAACTATTCGCCCGAAGGCATCGGCT TCGATGACTGGAAGGTGCTCGACGACCAGGGCGAATATTATAACCCCGACATCATCACGCCGAAGGGTCGCAGCATCGTG GAGGGCTATGCGACCGACCTCACGACGCAATACAGCCTCGACTGGCTGAAGACCGGGCGCGACAAGTCGAAGCCCTTTGC GATCCTGATCCACCACAAGGCGCCGCACCGCAATTTCATGCCCGCGCTGCGCCATGTGCAGAAATATCAGGGGGTGACCT TTCCTGTCCCCGCCAGTTATTTCGACGATTATGCGGGTCGCAAGGCCGCTGCGGCGCAGGAAATGACCATCTATCGCGAC ATGTATGAGGGGCATGACCTCAAGATGACGGTCGCGAAGGGGTCGGCCGAGCTTCGCTACAACCGCTGGCCCGGCGCCTT CGACCGGATGACGCACACGCAACAGGCCGCATGGGACGCGCTGATGCAGGCCGACAACGACCGCATGAACGCCGCCAACC TTTCCGGCCACGACCTCGCGATCTGGAAATATCAGCGTTACATGCAGCAATATCTGGGCACGATCGCCGCGGTCGACGAA GGCGTCGGCGCGGTGCTCGATTATCTGGAGGACAGCGGCCTCGATCGGAACACGATCGTCGTCTATACCTCCGACCAGGG CTTTTACCTTGGCGAACATGGCTGGTTCGACAAGCGCTTCATCTATGAAGAATCGATGCGCACGCCCTTCCTGATCCAGT ATCCGGGACATATCCGCCCCGGTACGCGCGTCGCCGCGCCGATCCAGAATATCGACTATGCCCCGACCTTCCTCGACTAT GCCGGGGTGAAGGGACCGGCGACGATCCAGGGGCGGTCGGTGACGCCGCTGCTTGCCGGGCGCACGCCGCCGGATTGGCG CAAGGACGTCTATTATCATTATTATGAATTTCCGGGCTTTCATGCCGTTCGCGCGCATTACGGTGTACGCGGCGAACGCT ACAAGCTCGTGCGCTTTTATGGCGACGATCTTGACGCATGGGAGTTTTACGACCTGAAAACCGATCCGCGGGAGATGCAC AACCGGATCGACGATCCGGCGATGAAAGCGCCGATCGCCGCGATGAAAAAGCGGCTCGTCGAACTGCGTCGTCAATATGG CGACGGCAGCGGACCCTCGATTTCCTGA
Upstream 100 bases:
>100_bases GGCAGCGAGCCCGGCGCGTTCAAGCTGTGGATCGGCCCCTCGTCGGCCGAAGGATCCGAAGCCAGCTTCGAACTGACCGA ATAGGAGAAGACCAATACGT
Downstream 100 bases:
>100_bases ACGGGTTGCGATCGACCCGGCCCGTCGGTAGGCGCGGCGCGTGAGTCCTGAACCGCCCTCCGCCTTCGCGCCCTTTCGCT ACCCGGCGTTCCGCGCGATC
Product: sulfatase
Products: NA
Alternate protein names: AS; Aryl-sulfate sulphohydrolase [H]
Number of amino acids: Translated: 515; Mature: 514
Protein sequence:
>515_residues MPIALALPLAFVAAAGAQPPARPNIVFIMSDDHAYQAISAYGSALSKLAPTPNIDRIAKNGAIFTQSFVGNSLCGPSRAT LLTGRHSHAHGFRQNGNRFDNRVWVWPRALSQAGYATAMFGKWHLNYSPEGIGFDDWKVLDDQGEYYNPDIITPKGRSIV EGYATDLTTQYSLDWLKTGRDKSKPFAILIHHKAPHRNFMPALRHVQKYQGVTFPVPASYFDDYAGRKAAAAQEMTIYRD MYEGHDLKMTVAKGSAELRYNRWPGAFDRMTHTQQAAWDALMQADNDRMNAANLSGHDLAIWKYQRYMQQYLGTIAAVDE GVGAVLDYLEDSGLDRNTIVVYTSDQGFYLGEHGWFDKRFIYEESMRTPFLIQYPGHIRPGTRVAAPIQNIDYAPTFLDY AGVKGPATIQGRSVTPLLAGRTPPDWRKDVYYHYYEFPGFHAVRAHYGVRGERYKLVRFYGDDLDAWEFYDLKTDPREMH NRIDDPAMKAPIAAMKKRLVELRRQYGDGSGPSIS
Sequences:
>Translated_515_residues MPIALALPLAFVAAAGAQPPARPNIVFIMSDDHAYQAISAYGSALSKLAPTPNIDRIAKNGAIFTQSFVGNSLCGPSRAT LLTGRHSHAHGFRQNGNRFDNRVWVWPRALSQAGYATAMFGKWHLNYSPEGIGFDDWKVLDDQGEYYNPDIITPKGRSIV EGYATDLTTQYSLDWLKTGRDKSKPFAILIHHKAPHRNFMPALRHVQKYQGVTFPVPASYFDDYAGRKAAAAQEMTIYRD MYEGHDLKMTVAKGSAELRYNRWPGAFDRMTHTQQAAWDALMQADNDRMNAANLSGHDLAIWKYQRYMQQYLGTIAAVDE GVGAVLDYLEDSGLDRNTIVVYTSDQGFYLGEHGWFDKRFIYEESMRTPFLIQYPGHIRPGTRVAAPIQNIDYAPTFLDY AGVKGPATIQGRSVTPLLAGRTPPDWRKDVYYHYYEFPGFHAVRAHYGVRGERYKLVRFYGDDLDAWEFYDLKTDPREMH NRIDDPAMKAPIAAMKKRLVELRRQYGDGSGPSIS >Mature_514_residues PIALALPLAFVAAAGAQPPARPNIVFIMSDDHAYQAISAYGSALSKLAPTPNIDRIAKNGAIFTQSFVGNSLCGPSRATL LTGRHSHAHGFRQNGNRFDNRVWVWPRALSQAGYATAMFGKWHLNYSPEGIGFDDWKVLDDQGEYYNPDIITPKGRSIVE GYATDLTTQYSLDWLKTGRDKSKPFAILIHHKAPHRNFMPALRHVQKYQGVTFPVPASYFDDYAGRKAAAAQEMTIYRDM YEGHDLKMTVAKGSAELRYNRWPGAFDRMTHTQQAAWDALMQADNDRMNAANLSGHDLAIWKYQRYMQQYLGTIAAVDEG VGAVLDYLEDSGLDRNTIVVYTSDQGFYLGEHGWFDKRFIYEESMRTPFLIQYPGHIRPGTRVAAPIQNIDYAPTFLDYA GVKGPATIQGRSVTPLLAGRTPPDWRKDVYYHYYEFPGFHAVRAHYGVRGERYKLVRFYGDDLDAWEFYDLKTDPREMHN RIDDPAMKAPIAAMKKRLVELRRQYGDGSGPSIS
Specific function: Unknown
COG id: COG3119
COG function: function code P; Arylsulfatase A and related enzymes
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sulfatase family [H]
Homologues:
Organism=Homo sapiens, GI4504061, Length=451, Percent_Identity=26.3858093126386, Blast_Score=113, Evalue=4e-25, Organism=Homo sapiens, GI71852584, Length=479, Percent_Identity=24.8434237995825, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI58743319, Length=552, Percent_Identity=24.0942028985507, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI4503899, Length=152, Percent_Identity=34.2105263157895, Blast_Score=82, Evalue=9e-16, Organism=Homo sapiens, GI157266309, Length=145, Percent_Identity=35.8620689655172, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI189571643, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=6e-15, Organism=Homo sapiens, GI189571641, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=6e-15, Organism=Homo sapiens, GI189571638, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=6e-15, Organism=Homo sapiens, GI189571636, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=6e-15, Organism=Homo sapiens, GI39930577, Length=175, Percent_Identity=30.8571428571429, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI240255478, Length=191, Percent_Identity=27.2251308900524, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI240255483, Length=191, Percent_Identity=27.2251308900524, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI29789100, Length=191, Percent_Identity=27.2251308900524, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI146229331, Length=116, Percent_Identity=42.2413793103448, Blast_Score=76, Evalue=6e-14, Organism=Homo sapiens, GI146229329, Length=116, Percent_Identity=42.2413793103448, Blast_Score=76, Evalue=6e-14, Organism=Homo sapiens, GI6005990, Length=116, Percent_Identity=42.2413793103448, Blast_Score=76, Evalue=6e-14, Organism=Homo sapiens, GI146229324, Length=116, Percent_Identity=42.2413793103448, Blast_Score=76, Evalue=6e-14, Organism=Homo sapiens, GI71852586, Length=114, Percent_Identity=39.4736842105263, Blast_Score=76, Evalue=7e-14, Organism=Homo sapiens, GI53831991, Length=133, Percent_Identity=34.5864661654135, Blast_Score=76, Evalue=7e-14, Organism=Homo sapiens, GI31742482, Length=114, Percent_Identity=36.8421052631579, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI45430057, Length=185, Percent_Identity=30.2702702702703, Blast_Score=70, Evalue=5e-12, Organism=Homo sapiens, GI59797060, Length=216, Percent_Identity=30.0925925925926, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI109389362, Length=220, Percent_Identity=25.4545454545455, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI4506919, Length=183, Percent_Identity=29.5081967213115, Blast_Score=66, Evalue=6e-11, Organism=Escherichia coli, GI1790233, Length=155, Percent_Identity=30.3225806451613, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790112, Length=182, Percent_Identity=32.4175824175824, Blast_Score=70, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17568795, Length=460, Percent_Identity=25.8695652173913, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17559078, Length=126, Percent_Identity=38.8888888888889, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24647401, Length=116, Percent_Identity=43.1034482758621, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI281363223, Length=262, Percent_Identity=27.0992366412214, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI281366397, Length=223, Percent_Identity=30.0448430493274, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI281366395, Length=223, Percent_Identity=30.0448430493274, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24666163, Length=223, Percent_Identity=30.0448430493274, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24656835, Length=559, Percent_Identity=23.2558139534884, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI24653364, Length=209, Percent_Identity=29.6650717703349, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI19922168, Length=209, Percent_Identity=29.6650717703349, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24666175, Length=145, Percent_Identity=35.1724137931034, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24666109, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: =3.1.6.1 [H]
Molecular weight: Translated: 58224; Mature: 58093
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: PS00523 SULFATASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIALALPLAFVAAAGAQPPARPNIVFIMSDDHAYQAISAYGSALSKLAPTPNIDRIAKN CCEEHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHCC GAIFTQSFVGNSLCGPSRATLLTGRHSHAHGFRQNGNRFDNRVWVWPRALSQAGYATAMF CCEEEHHHCCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCEEEECHHHHHHCCCEEEEE GKWHLNYSPEGIGFDDWKVLDDQGEYYNPDIITPKGRSIVEGYATDLTTQYSLDWLKTGR EEEEECCCCCCCCCCCCEEECCCCCEECCCEECCCCCHHHHHHHHCCEEHEEHHHHHCCC DKSKPFAILIHHKAPHRNFMPALRHVQKYQGVTFPVPASYFDDYAGRKAAAAQEMTIYRD CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH MYEGHDLKMTVAKGSAELRYNRWPGAFDRMTHTQQAAWDALMQADNDRMNAANLSGHDLA HHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE IWKYQRYMQQYLGTIAAVDEGVGAVLDYLEDSGLDRNTIVVYTSDQGFYLGEHGWFDKRF HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCCCCCHHE IYEESMRTPFLIQYPGHIRPGTRVAAPIQNIDYAPTFLDYAGVKGPATIQGRSVTPLLAG EHHHHCCCCEEEECCCCCCCCCEEECCHHCCCCCCHHHHHCCCCCCCEECCCCCCEEECC RTPPDWRKDVYYHYYEFPGFHAVRAHYGVRGERYKLVRFYGDDLDAWEFYDLKTDPREMH CCCCCHHHCCEEEEEECCCCEEEHHHCCCCCCEEEEEEEECCCCCCEEEEECCCCHHHHH NRIDDPAMKAPIAAMKKRLVELRRQYGDGSGPSIS HCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure PIALALPLAFVAAAGAQPPARPNIVFIMSDDHAYQAISAYGSALSKLAPTPNIDRIAKN CEEHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHCC GAIFTQSFVGNSLCGPSRATLLTGRHSHAHGFRQNGNRFDNRVWVWPRALSQAGYATAMF CCEEEHHHCCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCEEEECHHHHHHCCCEEEEE GKWHLNYSPEGIGFDDWKVLDDQGEYYNPDIITPKGRSIVEGYATDLTTQYSLDWLKTGR EEEEECCCCCCCCCCCCEEECCCCCEECCCEECCCCCHHHHHHHHCCEEHEEHHHHHCCC DKSKPFAILIHHKAPHRNFMPALRHVQKYQGVTFPVPASYFDDYAGRKAAAAQEMTIYRD CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH MYEGHDLKMTVAKGSAELRYNRWPGAFDRMTHTQQAAWDALMQADNDRMNAANLSGHDLA HHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE IWKYQRYMQQYLGTIAAVDEGVGAVLDYLEDSGLDRNTIVVYTSDQGFYLGEHGWFDKRF HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCCCCCHHE IYEESMRTPFLIQYPGHIRPGTRVAAPIQNIDYAPTFLDYAGVKGPATIQGRSVTPLLAG EHHHHCCCCEEEECCCCCCCCCEEECCHHCCCCCCHHHHHCCCCCCCEECCCCCCEEECC RTPPDWRKDVYYHYYEFPGFHAVRAHYGVRGERYKLVRFYGDDLDAWEFYDLKTDPREMH CCCCCHHHCCEEEEEECCCCEEEHHHCCCCCCEEEEEEEECCCCCCEEEEECCCCHHHHH NRIDDPAMKAPIAAMKKRLVELRRQYGDGSGPSIS HCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7744061; 10984043 [H]