| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is bglX [H]
Identifier: 103486503
GI number: 103486503
Start: 1042291
End: 1044609
Strand: Reverse
Name: bglX [H]
Synonym: Sala_1014
Alternate gene names: 103486503
Gene position: 1044609-1042291 (Counterclockwise)
Preceding gene: 103486506
Following gene: 103486502
Centisome position: 31.23
GC content: 63.82
Gene sequence:
>2319_bases ATGCCGCCGATTTCGCGCAATCTGACAAGCGCCACGCTCGCCACGCTGCTGGTGGCCGGCTCGCTGGCCCCCGCCCCGCT GACCGCCGCCCCCGCGGCGACCGCCAGCGACAAGGCGCCGGTCGATGCCGCGAGCTGGCAGCGCGCCGACCCCGCGATGG ACCGCTTCATCGCCGATCTGATGGTGAAGATGACGCTCGACGAAAAGACCGGCCAGCTCACGCTGCTCACGAGCAACTGG GAGTCGACCGGCCCGACGATGCGCGACAGTTACAAGGAGGATATTCGCGCCGGGCGTGTCGGGGCGATCTTCAACGCCTA CACCGCCAAATATACGCGCGAACTGCAAGCGCTTGCGGTCGAGGGAACGCGCCTCAAAATCCCCCTGCTCTTCGGCTATG ACGTGATCCACGGCCACCGGACGATCTTTCCCATCTCGCTCGGCGAAGCGGCGAGCTGGGACCTGCAGGCGATTGAAAAA GCCGCTCGAATCTCGGCCATCGAGGCATCGGCCGAGGGCATCCACTGGACCTTCTCACCCATGGTCGACATCGCGCGCGA TCCGCGCTGGGGTCGCATTTCCGAAGGCGCGGGCGAGGATGTCTATCTCGGCAGCCTGATCGCAAAGGCGCGCGTGCGCG GCTATCAGGGCGGCGACCTGTCGCGGCCCGACACGATCCTGGCGACCGCCAAGCATTTTGCCGCCTATGGCGCGGCGCAG GCGGGACGCGATTACCACACGGTCGACATTTCGGAGCGCACGATGCGCGATGTCTATCTGCCGCCATTCAAGGCCGCGGC CGACGCGGGGGCAGCGACCTTCATGACCGCATTCAACGAATATGACGGTGTCCCGGCGTCGGGGAGCCACTATCTGCTCA CCGACGTGCTGCGCAAGAAATGGGGCTTCAAAGGCTTTGTCGTAACCGATTACACGTCGATCAACGAAATGGTCCCGCAC GGCTATGCGAAGGATCTGAAGCAGGCAGGCGAGCAGGCGATGCGCGCCGGAGTCGACATGGACATGCAAGGTGCGGTTTT CATGGAAAACCTCGCCAAATCGGTCGCCGAGGGCAAGGTCGACACCGCGCGCATCGACGCGGCGGTGAAGGCGATACTCG AGATGAAATATCGCCTCGGCCTGTTCGACGATCCTTATCGTTACGCCGACGCGGCGCGCGAAAAAGCGACGATCTACAAG CCCGCGTTTCTCGAAGCGGCGCGCGATGTCGCGCGCAAGTCGATCGTCCTCCTCAAGAACAAGGACAATGTCCTGCCACT GGCCGCCAGCGCAAAGTCGATCGCGGTGATCGGCCCGCTCGGCAACAGCAAGGAAGATATGATCGGCAGCTGGTCGGCCG CGGGCGACCGGCGGACGCGGCCGGTTACCTTGCTCGAAGGCTTGCAGGCCGGCGCCCCCAAGGGAACGACGATCGCCTAT GCCAAGGGCGCGAGCTATCATTTCGACGATGTCGGCAAGACCGACGGTTTTGCCGAAGCGCTCGCGCTTGCGGAAAAATC GGATGTCATCATCGCCGCGATGGGTGAACATTGGAACATGACCGGCGAGGCGGCAAGCCGCACCTCGCTTGACCTGCCGG GCAACCAGCAGGCGCTTCTCGAAGCGCTCGAAAAGACCGGCAAGCCGGTCATCCTCGTGCTGATGAGCGGGCGACCGAAC AGCATCGAATGGGCCGATGCCAATGTCGATGCGATTCTGGAGGCCTGGTATCCCGGCACGATGGGGGGACATGCGATCGC CGACATATTGTACGGTCGCTACAACCCGTCGGGCAAATTACCGGTGACCTTTCCGCGCACGGTCGGGCAGGTGCCGATCC ATTATGACATGAAGAACACCGGTCGCCCGATCGAACTGGGCGCGCCGGGCGCGAAATATGTCTCGCGCTACCTCAACACG CCGAACACGCCGCTTTATCCCTTTGGCTATGGCCTCAGCTACACAAGCTTCACTTACTCGCCGGTCACGCTCGACAGGTC GAAAATCCGCCCCGGCGAACCGCTGACCGCCAGCGTCACCGTGACCAACAGCGGCCCGCGCGACGGGGAGGAGGTGGTGC AGCTTTACGTCCGCGACCTCGTCGGTTCGGTGACGCGCCCGGTCAAGGAATTGAAGGGATTCCAGAAGATCGGCCTGAAA AAGGGCGAAACGCGCACGGTGCGCTTCACGCTGACCGACGCCGACCTCGCCTTCACGCGCCAGGACATGAGCTGGGGCAG CGAGCCCGGCGCGTTCAAGCTGTGGATCGGCCCCTCGTCGGCCGAAGGATCCGAAGCCAGCTTCGAACTGACCGAATAG
Upstream 100 bases:
>100_bases ATAGGGGGAAGCGACACGGGATGACGAAATCGGGGACCAGCCCGTTTTTGGCCGATCCGCGTGAGAATCTATAAAGCAAG TTTACCGGGAAGGACGAATC
Downstream 100 bases:
>100_bases GAGAAGACCAATACGTATGCCGATCGCCCTCGCGCTGCCGCTGGCCTTCGTCGCCGCGGCGGGCGCGCAGCCCCCTGCCC GTCCGAACATCGTCTTCATC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 772; Mature: 771
Protein sequence:
>772_residues MPPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADLMVKMTLDEKTGQLTLLTSNW ESTGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAVEGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEK AARISAIEASAEGIHWTFSPMVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQ AGRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKKWGFKGFVVTDYTSINEMVPH GYAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKVDTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYK PAFLEAARDVARKSIVLLKNKDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAY AKGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALLEALEKTGKPVILVLMSGRPN SIEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKLPVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNT PNTPLYPFGYGLSYTSFTYSPVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLK KGETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE
Sequences:
>Translated_772_residues MPPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADLMVKMTLDEKTGQLTLLTSNW ESTGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAVEGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEK AARISAIEASAEGIHWTFSPMVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQ AGRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKKWGFKGFVVTDYTSINEMVPH GYAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKVDTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYK PAFLEAARDVARKSIVLLKNKDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAY AKGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALLEALEKTGKPVILVLMSGRPN SIEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKLPVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNT PNTPLYPFGYGLSYTSFTYSPVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLK KGETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE >Mature_771_residues PPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADLMVKMTLDEKTGQLTLLTSNWE STGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAVEGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEKA ARISAIEASAEGIHWTFSPMVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQA GRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKKWGFKGFVVTDYTSINEMVPHG YAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKVDTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYKP AFLEAARDVARKSIVLLKNKDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAYA KGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALLEALEKTGKPVILVLMSGRPNS IEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKLPVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNTP NTPLYPFGYGLSYTSFTYSPVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLKK GETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE
Specific function: Unknown
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=741, Percent_Identity=45.748987854251, Blast_Score=651, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 83426; Mature: 83294
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: PS00775 GLYCOSYL_HYDROL_F3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADL CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHH MVKMTLDEKTGQLTLLTSNWESTGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAV HHHHEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEE EGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEKAARISAIEASAEGIHWTFSP CCCEEEEEEEECCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHEECCCCCCEEEHHH MVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQ HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH AGRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKK CCCCEEEEECCHHHHHHCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH WGFKGFVVTDYTSINEMVPHGYAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKV CCCCCEEEECCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC DTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYKPAFLEAARDVARKSIVLLKN HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHHCEEEEEEC KDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAY CCCEEEEECCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEE AKGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALL ECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH EALEKTGKPVILVLMSGRPNSIEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKL HHHHHCCCCEEEEEECCCCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC PVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNTPNTPLYPFGYGLSYTSFTYS EEECCHHHCCCCEEECCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC PVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLK CEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC KGETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE CCCCEEEEEEEECCCCEEEHHHCCCCCCCCEEEEEECCCCCCCCCCCEEECC >Mature Secondary Structure PPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADL CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHH MVKMTLDEKTGQLTLLTSNWESTGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAV HHHHEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEE EGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEKAARISAIEASAEGIHWTFSP CCCEEEEEEEECCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHEECCCCCCEEEHHH MVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQ HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH AGRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKK CCCCEEEEECCHHHHHHCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH WGFKGFVVTDYTSINEMVPHGYAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKV CCCCCEEEECCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC DTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYKPAFLEAARDVARKSIVLLKN HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHHCEEEEEEC KDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAY CCCEEEEECCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEE AKGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALL ECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH EALEKTGKPVILVLMSGRPNSIEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKL HHHHHCCCCEEEEEECCCCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC PVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNTPNTPLYPFGYGLSYTSFTYS EEECCHHHCCCCEEECCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC PVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLK CEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC KGETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE CCCCEEEEEEEECCCCEEEHHHCCCCCCCCEEEEEECCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]