Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is bglX [H]

Identifier: 103486503

GI number: 103486503

Start: 1042291

End: 1044609

Strand: Reverse

Name: bglX [H]

Synonym: Sala_1014

Alternate gene names: 103486503

Gene position: 1044609-1042291 (Counterclockwise)

Preceding gene: 103486506

Following gene: 103486502

Centisome position: 31.23

GC content: 63.82

Gene sequence:

>2319_bases
ATGCCGCCGATTTCGCGCAATCTGACAAGCGCCACGCTCGCCACGCTGCTGGTGGCCGGCTCGCTGGCCCCCGCCCCGCT
GACCGCCGCCCCCGCGGCGACCGCCAGCGACAAGGCGCCGGTCGATGCCGCGAGCTGGCAGCGCGCCGACCCCGCGATGG
ACCGCTTCATCGCCGATCTGATGGTGAAGATGACGCTCGACGAAAAGACCGGCCAGCTCACGCTGCTCACGAGCAACTGG
GAGTCGACCGGCCCGACGATGCGCGACAGTTACAAGGAGGATATTCGCGCCGGGCGTGTCGGGGCGATCTTCAACGCCTA
CACCGCCAAATATACGCGCGAACTGCAAGCGCTTGCGGTCGAGGGAACGCGCCTCAAAATCCCCCTGCTCTTCGGCTATG
ACGTGATCCACGGCCACCGGACGATCTTTCCCATCTCGCTCGGCGAAGCGGCGAGCTGGGACCTGCAGGCGATTGAAAAA
GCCGCTCGAATCTCGGCCATCGAGGCATCGGCCGAGGGCATCCACTGGACCTTCTCACCCATGGTCGACATCGCGCGCGA
TCCGCGCTGGGGTCGCATTTCCGAAGGCGCGGGCGAGGATGTCTATCTCGGCAGCCTGATCGCAAAGGCGCGCGTGCGCG
GCTATCAGGGCGGCGACCTGTCGCGGCCCGACACGATCCTGGCGACCGCCAAGCATTTTGCCGCCTATGGCGCGGCGCAG
GCGGGACGCGATTACCACACGGTCGACATTTCGGAGCGCACGATGCGCGATGTCTATCTGCCGCCATTCAAGGCCGCGGC
CGACGCGGGGGCAGCGACCTTCATGACCGCATTCAACGAATATGACGGTGTCCCGGCGTCGGGGAGCCACTATCTGCTCA
CCGACGTGCTGCGCAAGAAATGGGGCTTCAAAGGCTTTGTCGTAACCGATTACACGTCGATCAACGAAATGGTCCCGCAC
GGCTATGCGAAGGATCTGAAGCAGGCAGGCGAGCAGGCGATGCGCGCCGGAGTCGACATGGACATGCAAGGTGCGGTTTT
CATGGAAAACCTCGCCAAATCGGTCGCCGAGGGCAAGGTCGACACCGCGCGCATCGACGCGGCGGTGAAGGCGATACTCG
AGATGAAATATCGCCTCGGCCTGTTCGACGATCCTTATCGTTACGCCGACGCGGCGCGCGAAAAAGCGACGATCTACAAG
CCCGCGTTTCTCGAAGCGGCGCGCGATGTCGCGCGCAAGTCGATCGTCCTCCTCAAGAACAAGGACAATGTCCTGCCACT
GGCCGCCAGCGCAAAGTCGATCGCGGTGATCGGCCCGCTCGGCAACAGCAAGGAAGATATGATCGGCAGCTGGTCGGCCG
CGGGCGACCGGCGGACGCGGCCGGTTACCTTGCTCGAAGGCTTGCAGGCCGGCGCCCCCAAGGGAACGACGATCGCCTAT
GCCAAGGGCGCGAGCTATCATTTCGACGATGTCGGCAAGACCGACGGTTTTGCCGAAGCGCTCGCGCTTGCGGAAAAATC
GGATGTCATCATCGCCGCGATGGGTGAACATTGGAACATGACCGGCGAGGCGGCAAGCCGCACCTCGCTTGACCTGCCGG
GCAACCAGCAGGCGCTTCTCGAAGCGCTCGAAAAGACCGGCAAGCCGGTCATCCTCGTGCTGATGAGCGGGCGACCGAAC
AGCATCGAATGGGCCGATGCCAATGTCGATGCGATTCTGGAGGCCTGGTATCCCGGCACGATGGGGGGACATGCGATCGC
CGACATATTGTACGGTCGCTACAACCCGTCGGGCAAATTACCGGTGACCTTTCCGCGCACGGTCGGGCAGGTGCCGATCC
ATTATGACATGAAGAACACCGGTCGCCCGATCGAACTGGGCGCGCCGGGCGCGAAATATGTCTCGCGCTACCTCAACACG
CCGAACACGCCGCTTTATCCCTTTGGCTATGGCCTCAGCTACACAAGCTTCACTTACTCGCCGGTCACGCTCGACAGGTC
GAAAATCCGCCCCGGCGAACCGCTGACCGCCAGCGTCACCGTGACCAACAGCGGCCCGCGCGACGGGGAGGAGGTGGTGC
AGCTTTACGTCCGCGACCTCGTCGGTTCGGTGACGCGCCCGGTCAAGGAATTGAAGGGATTCCAGAAGATCGGCCTGAAA
AAGGGCGAAACGCGCACGGTGCGCTTCACGCTGACCGACGCCGACCTCGCCTTCACGCGCCAGGACATGAGCTGGGGCAG
CGAGCCCGGCGCGTTCAAGCTGTGGATCGGCCCCTCGTCGGCCGAAGGATCCGAAGCCAGCTTCGAACTGACCGAATAG

Upstream 100 bases:

>100_bases
ATAGGGGGAAGCGACACGGGATGACGAAATCGGGGACCAGCCCGTTTTTGGCCGATCCGCGTGAGAATCTATAAAGCAAG
TTTACCGGGAAGGACGAATC

Downstream 100 bases:

>100_bases
GAGAAGACCAATACGTATGCCGATCGCCCTCGCGCTGCCGCTGGCCTTCGTCGCCGCGGCGGGCGCGCAGCCCCCTGCCC
GTCCGAACATCGTCTTCATC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]

Number of amino acids: Translated: 772; Mature: 771

Protein sequence:

>772_residues
MPPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADLMVKMTLDEKTGQLTLLTSNW
ESTGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAVEGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEK
AARISAIEASAEGIHWTFSPMVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQ
AGRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKKWGFKGFVVTDYTSINEMVPH
GYAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKVDTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYK
PAFLEAARDVARKSIVLLKNKDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAY
AKGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALLEALEKTGKPVILVLMSGRPN
SIEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKLPVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNT
PNTPLYPFGYGLSYTSFTYSPVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLK
KGETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE

Sequences:

>Translated_772_residues
MPPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADLMVKMTLDEKTGQLTLLTSNW
ESTGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAVEGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEK
AARISAIEASAEGIHWTFSPMVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQ
AGRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKKWGFKGFVVTDYTSINEMVPH
GYAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKVDTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYK
PAFLEAARDVARKSIVLLKNKDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAY
AKGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALLEALEKTGKPVILVLMSGRPN
SIEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKLPVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNT
PNTPLYPFGYGLSYTSFTYSPVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLK
KGETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE
>Mature_771_residues
PPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADLMVKMTLDEKTGQLTLLTSNWE
STGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAVEGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEKA
ARISAIEASAEGIHWTFSPMVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQA
GRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKKWGFKGFVVTDYTSINEMVPHG
YAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKVDTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYKP
AFLEAARDVARKSIVLLKNKDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAYA
KGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALLEALEKTGKPVILVLMSGRPNS
IEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKLPVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNTP
NTPLYPFGYGLSYTSFTYSPVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLKK
GETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE

Specific function: Unknown

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788453, Length=741, Percent_Identity=45.748987854251, Blast_Score=651, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: =3.2.1.21 [H]

Molecular weight: Translated: 83426; Mature: 83294

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADL
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHH
MVKMTLDEKTGQLTLLTSNWESTGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAV
HHHHEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEE
EGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEKAARISAIEASAEGIHWTFSP
CCCEEEEEEEECCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHEECCCCCCEEEHHH
MVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQ
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AGRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKK
CCCCEEEEECCHHHHHHCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
WGFKGFVVTDYTSINEMVPHGYAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKV
CCCCCEEEECCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
DTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYKPAFLEAARDVARKSIVLLKN
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHHCEEEEEEC
KDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAY
CCCEEEEECCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEE
AKGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALL
ECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
EALEKTGKPVILVLMSGRPNSIEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKL
HHHHHCCCCEEEEEECCCCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
PVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNTPNTPLYPFGYGLSYTSFTYS
EEECCHHHCCCCEEECCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC
PVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLK
CEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
KGETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE
CCCCEEEEEEEECCCCEEEHHHCCCCCCCCEEEEEECCCCCCCCCCCEEECC
>Mature Secondary Structure 
PPISRNLTSATLATLLVAGSLAPAPLTAAPAATASDKAPVDAASWQRADPAMDRFIADL
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHH
MVKMTLDEKTGQLTLLTSNWESTGPTMRDSYKEDIRAGRVGAIFNAYTAKYTRELQALAV
HHHHEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEE
EGTRLKIPLLFGYDVIHGHRTIFPISLGEAASWDLQAIEKAARISAIEASAEGIHWTFSP
CCCEEEEEEEECCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHEECCCCCCEEEHHH
MVDIARDPRWGRISEGAGEDVYLGSLIAKARVRGYQGGDLSRPDTILATAKHFAAYGAAQ
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AGRDYHTVDISERTMRDVYLPPFKAAADAGAATFMTAFNEYDGVPASGSHYLLTDVLRKK
CCCCEEEEECCHHHHHHCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
WGFKGFVVTDYTSINEMVPHGYAKDLKQAGEQAMRAGVDMDMQGAVFMENLAKSVAEGKV
CCCCCEEEECCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
DTARIDAAVKAILEMKYRLGLFDDPYRYADAAREKATIYKPAFLEAARDVARKSIVLLKN
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHHCEEEEEEC
KDNVLPLAASAKSIAVIGPLGNSKEDMIGSWSAAGDRRTRPVTLLEGLQAGAPKGTTIAY
CCCEEEEECCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEE
AKGASYHFDDVGKTDGFAEALALAEKSDVIIAAMGEHWNMTGEAASRTSLDLPGNQQALL
ECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
EALEKTGKPVILVLMSGRPNSIEWADANVDAILEAWYPGTMGGHAIADILYGRYNPSGKL
HHHHHCCCCEEEEEECCCCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
PVTFPRTVGQVPIHYDMKNTGRPIELGAPGAKYVSRYLNTPNTPLYPFGYGLSYTSFTYS
EEECCHHHCCCCEEECCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC
PVTLDRSKIRPGEPLTASVTVTNSGPRDGEEVVQLYVRDLVGSVTRPVKELKGFQKIGLK
CEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
KGETRTVRFTLTDADLAFTRQDMSWGSEPGAFKLWIGPSSAEGSEASFELTE
CCCCEEEEEEEECCCCEEEHHHCCCCCCCCEEEEEECCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]