| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is ygcG [H]
Identifier: 103486479
GI number: 103486479
Start: 1015790
End: 1016635
Strand: Reverse
Name: ygcG [H]
Synonym: Sala_0990
Alternate gene names: 103486479
Gene position: 1016635-1015790 (Counterclockwise)
Preceding gene: 103486480
Following gene: 103486478
Centisome position: 30.39
GC content: 70.57
Gene sequence:
>846_bases GTGGGCGCCCCCGCCCTGATCCGTTCGCTGGCGGCGGCGATCCTTTCGGGGCTGCTGCTGCTTGCCGCTCCGGTAGCCGC GCAGAGCTTCCCCAAGCTCGCGGGCAATCCCGTCGTCGACCAGGCGGACATCATCCCCGCCGCCGAGGAAGCGGCGCTCA ACACGCAGCTGCTCGACCTCGAAAAACGCACCGGACACCAGCTTGTCGTCGCGACGGTCAGCGACCTTGAGGGCCGCGAT GTCGCCGATTATGGCTATCGCCTCGGCCGCGAATGGGGGATCGGCGATGCCGAACGCGACGATGGCGTCGTGTTCCTGAT CGCGCCGAACGAGCGGCGAATGCACATTGCGGTGGGGCTGGGGCTCGAACCTGTTCTCACCGATGCGCTGTCGGGGCGGA TCATCCGCGATATCATCACCCCGCGCTTCAGGGACGGCGACTATCCCGGCGGCATCCGGGCCGGGGTGAACGCGATCGCC GAGCAGATCGAACTGCCGCCGGAGGAGGCCGCCGCGCGCGCCAAGGCGGCGGCGGCGCAGGAGCGCGACCGCGCCGACGA CGGCAGTTTCGGCGGGCTTTTCTTCCTCGGTTTCATCATCCTCATCTTCTTCATCATCCCCTGGTTCGCGAGCCGCGGGC GCGGCAGGAAACGTCGCCGACGCCGCGACAGCCCGTGGGGCGCGGCGCCGATCATCATCTGGGGTGACGATGACGATTGG GGCGGCTGGGGCGGTGGCGGCGGATCGTCGTGGGGCGGTGGCGGCGGTTTCGGCGGTGGCGGCTTCGGCGGCTTTTCGGG CGGCGGCGGCAGCTTCGGCGGCGGCGGCGCGTCGGGCGGCTGGTAG
Upstream 100 bases:
>100_bases ATCGGCGCCAAAATCGTCCATGGCGCACAGCCGATGACGCCCTATCGCGCGGTGACGCCGAACGCCAATCAGGCGCCGAA GGTCGATTTCGGGCAGTAAG
Downstream 100 bases:
>100_bases GAGCACGGGACATGCCACGCAAGGTCAACCATGTGAGCGCCGAGGACCATCGCATCGTCACCGACGCGGTCGCGGCGGCC GAGCGCCACACCGACGGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MGAPALIRSLAAAILSGLLLLAAPVAAQSFPKLAGNPVVDQADIIPAAEEAALNTQLLDLEKRTGHQLVVATVSDLEGRD VADYGYRLGREWGIGDAERDDGVVFLIAPNERRMHIAVGLGLEPVLTDALSGRIIRDIITPRFRDGDYPGGIRAGVNAIA EQIELPPEEAAARAKAAAAQERDRADDGSFGGLFFLGFIILIFFIIPWFASRGRGRKRRRRRDSPWGAAPIIIWGDDDDW GGWGGGGGSSWGGGGGFGGGGFGGFSGGGGSFGGGGASGGW
Sequences:
>Translated_281_residues MGAPALIRSLAAAILSGLLLLAAPVAAQSFPKLAGNPVVDQADIIPAAEEAALNTQLLDLEKRTGHQLVVATVSDLEGRD VADYGYRLGREWGIGDAERDDGVVFLIAPNERRMHIAVGLGLEPVLTDALSGRIIRDIITPRFRDGDYPGGIRAGVNAIA EQIELPPEEAAARAKAAAAQERDRADDGSFGGLFFLGFIILIFFIIPWFASRGRGRKRRRRRDSPWGAAPIIIWGDDDDW GGWGGGGGSSWGGGGGFGGGGFGGFSGGGGSFGGGGASGGW >Mature_280_residues GAPALIRSLAAAILSGLLLLAAPVAAQSFPKLAGNPVVDQADIIPAAEEAALNTQLLDLEKRTGHQLVVATVSDLEGRDV ADYGYRLGREWGIGDAERDDGVVFLIAPNERRMHIAVGLGLEPVLTDALSGRIIRDIITPRFRDGDYPGGIRAGVNAIAE QIELPPEEAAARAKAAAAQERDRADDGSFGGLFFLGFIILIFFIIPWFASRGRGRKRRRRRDSPWGAAPIIIWGDDDDWG GWGGGGGSSWGGGGGFGGGGFGGFSGGGGSFGGGGASGGW
Specific function: Unknown
COG id: COG1512
COG function: function code R; Beta-propeller domains of methanol dehydrogenase type
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0603 family [H]
Homologues:
Organism=Escherichia coli, GI87082161, Length=146, Percent_Identity=31.5068493150685, Blast_Score=79, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007621 [H]
Pfam domain/function: PF04536 DUF477 [H]
EC number: NA
Molecular weight: Translated: 29222; Mature: 29091
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAPALIRSLAAAILSGLLLLAAPVAAQSFPKLAGNPVVDQADIIPAAEEAALNTQLLDL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHH EKRTGHQLVVATVSDLEGRDVADYGYRLGREWGIGDAERDDGVVFLIAPNERRMHIAVGL HHCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEEEECC GLEPVLTDALSGRIIRDIITPRFRDGDYPGGIRAGVNAIAEQIELPPEEAAARAKAAAAQ CCHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH ERDRADDGSFGGLFFLGFIILIFFIIPWFASRGRGRKRRRRRDSPWGAAPIIIWGDDDDW HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEECCCCCC GGWGGGGGSSWGGGGGFGGGGFGGFSGGGGSFGGGGASGGW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GAPALIRSLAAAILSGLLLLAAPVAAQSFPKLAGNPVVDQADIIPAAEEAALNTQLLDL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHH EKRTGHQLVVATVSDLEGRDVADYGYRLGREWGIGDAERDDGVVFLIAPNERRMHIAVGL HHCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEEEECC GLEPVLTDALSGRIIRDIITPRFRDGDYPGGIRAGVNAIAEQIELPPEEAAARAKAAAAQ CCHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH ERDRADDGSFGGLFFLGFIILIFFIIPWFASRGRGRKRRRRRDSPWGAAPIIIWGDDDDW HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEECCCCCC GGWGGGGGSSWGGGGGFGGGGFGGFSGGGGSFGGGGASGGW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]