| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yjqA [H]
Identifier: 103486461
GI number: 103486461
Start: 997463
End: 997828
Strand: Direct
Name: yjqA [H]
Synonym: Sala_0972
Alternate gene names: 103486461
Gene position: 997463-997828 (Clockwise)
Preceding gene: 103486460
Following gene: 103486462
Centisome position: 29.82
GC content: 62.57
Gene sequence:
>366_bases ATGGGCCTGTTCAGCGCCGGGGACCTCGACGTTTCGCGCGCGCAGGCCGAGTTTCAGCCATGGCTGATCGACGGCGAACA GGTGCTCGCGGCGTTCCGCACGATTCGCGACACGGTGCTGCTCACCAGCCATCGCTTCGTCTTCGTCGACGTACAGGGGA TGACGGGATCGAAAAAGGATTTCCAAAGCATTCCCTGGCGTTCGGTGACGCGCTTTTCGTTCGAGACCGCGGGCACCTTT GACCTCGATGCCGACATGAAAGTCTGGGTTTCGGGTGCCGCGACGCCGCTCGAGGTCAAGATTTCGCGCAAGAGCGACCC GCAGCGCATCCACCAGCTGATGGCGCGCCTGATCGTTAGCCGCTGA
Upstream 100 bases:
>100_bases GGAGCAGGGCAAGCCCGTGCTCGACGAGGAAATCGGCAACGCCGTGCGGCTGACGCAGGGCGGCAAGGTCGTCAACGAGC GGCTGCTGGGGTAATCGGAT
Downstream 100 bases:
>100_bases CGATAATGAAAAAATGGCCGATTTGGGCCTTTTATTGATCGCGCGGCGGGTTACTATGGGACCTCAACCCCCGTCCTTGA ACAACCGGAGATTACCCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MGLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKDFQSIPWRSVTRFSFETAGTF DLDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVSR
Sequences:
>Translated_121_residues MGLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKDFQSIPWRSVTRFSFETAGTF DLDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVSR >Mature_120_residues GLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKDFQSIPWRSVTRFSFETAGTFD LDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012544 [H]
Pfam domain/function: PF08000 DUF1696 [H]
EC number: NA
Molecular weight: Translated: 13634; Mature: 13503
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKD CCCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCCH FQSIPWRSVTRFSFETAGTFDLDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVS HHCCCCCCEEEEECCCCCCEECCCCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHC R C >Mature Secondary Structure GLFSAGDLDVSRAQAEFQPWLIDGEQVLAAFRTIRDTVLLTSHRFVFVDVQGMTGSKKD CCCCCCCCCCHHHHHCCCCEEECHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCCH FQSIPWRSVTRFSFETAGTFDLDADMKVWVSGAATPLEVKISRKSDPQRIHQLMARLIVS HHCCCCCCEEEEECCCCCCEECCCCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]