| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486458
Identifier: 103486458
GI number: 103486458
Start: 993781
End: 994434
Strand: Reverse
Name: 103486458
Synonym: Sala_0968
Alternate gene names: NA
Gene position: 994434-993781 (Counterclockwise)
Preceding gene: 103486459
Following gene: 103486457
Centisome position: 29.73
GC content: 66.51
Gene sequence:
>654_bases ATGCCGTTCGATACCGCCGCCCATGCCGCCATGGTTGTCCGCAAGGTCGAGGACGTGACGCACGCGGGCCAGCCCTGCCG CGCCGTCGTCGCCGCGCGCGCCTATGCCACCGACATCGACGATCTGTGGAATGCGATCACCGACAAGGCGCGCATCGCGC GCTGGTTCGCCCCCGTGGAGGGCGACCTTGAACTTGGCGGCAAATATCAGATCAAAGGCAATGCCGGCGGCACCGTCACC GCGTGCGAGCCGCCGAAGGGCTTTGCCCTCACCTGGGAGTTTGGCGGCGGTGTGAGCTGGGTCGAGGTCGAGCTGACGGA GGCCGGCGACCAGACACAATTGACCCTGAAACATATCGCGCCGCGTGACGGCAAGTCGGAAGAGTTCTGGGACCAGTTCG GCCCCGGCGCGGTCGGCGTCGGCTGGGACCTGTCGCTGCTCGGCCTCGCCTGGCACCTCGAAACCGGCGATTCGGTTCAG GAACAATTTGCCGAAACGACATGGCCGTCGAGCGCCGAGGGGCGGGCTTTCGTGGGGGCGAGCAGCGATGGCTGGGCCGC AGCATCAATTGCTTATGGGACCGATGAGTCAGCCGCACGCCGCGCCGCGACCGCCACGACCGCCTTCTTTACCGGCGTAT CTGCATCTGAGTGA
Upstream 100 bases:
>100_bases GATACGCTTGCGGATCGGTTTGATTGGGCTGCTCGATCGGGCTACTTGATATATAAGTTTGAACTTATATGATGTCCCGA CAGAAATCGGGAGAATCATC
Downstream 100 bases:
>100_bases TGCACGCCTTCGACATCCTCGGCGATCCCGTCCGCCGCCGCATCCTCGAATTGCTTGCTGATGGGCAAATGGCGTCGGGC GAGATCGTCGAGGTAATCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Aha1 Domain-Containing Protein
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MPFDTAAHAAMVVRKVEDVTHAGQPCRAVVAARAYATDIDDLWNAITDKARIARWFAPVEGDLELGGKYQIKGNAGGTVT ACEPPKGFALTWEFGGGVSWVEVELTEAGDQTQLTLKHIAPRDGKSEEFWDQFGPGAVGVGWDLSLLGLAWHLETGDSVQ EQFAETTWPSSAEGRAFVGASSDGWAAASIAYGTDESAARRAATATTAFFTGVSASE
Sequences:
>Translated_217_residues MPFDTAAHAAMVVRKVEDVTHAGQPCRAVVAARAYATDIDDLWNAITDKARIARWFAPVEGDLELGGKYQIKGNAGGTVT ACEPPKGFALTWEFGGGVSWVEVELTEAGDQTQLTLKHIAPRDGKSEEFWDQFGPGAVGVGWDLSLLGLAWHLETGDSVQ EQFAETTWPSSAEGRAFVGASSDGWAAASIAYGTDESAARRAATATTAFFTGVSASE >Mature_216_residues PFDTAAHAAMVVRKVEDVTHAGQPCRAVVAARAYATDIDDLWNAITDKARIARWFAPVEGDLELGGKYQIKGNAGGTVTA CEPPKGFALTWEFGGGVSWVEVELTEAGDQTQLTLKHIAPRDGKSEEFWDQFGPGAVGVGWDLSLLGLAWHLETGDSVQE QFAETTWPSSAEGRAFVGASSDGWAAASIAYGTDESAARRAATATTAFFTGVSASE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22970; Mature: 22839
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFDTAAHAAMVVRKVEDVTHAGQPCRAVVAARAYATDIDDLWNAITDKARIARWFAPVE CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC GDLELGGKYQIKGNAGGTVTACEPPKGFALTWEFGGGVSWVEVELTEAGDQTQLTLKHIA CCEECCCEEEEECCCCCEEEECCCCCCCEEEEEECCCEEEEEEEEECCCCCEEEEEEECC PRDGKSEEFWDQFGPGAVGVGWDLSLLGLAWHLETGDSVQEQFAETTWPSSAEGRAFVGA CCCCCCHHHHHHCCCCEEECCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEC SSDGWAAASIAYGTDESAARRAATATTAFFTGVSASE CCCCCEEEEEEECCCHHHHHHHHHHHHHHEECCCCCC >Mature Secondary Structure PFDTAAHAAMVVRKVEDVTHAGQPCRAVVAARAYATDIDDLWNAITDKARIARWFAPVE CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC GDLELGGKYQIKGNAGGTVTACEPPKGFALTWEFGGGVSWVEVELTEAGDQTQLTLKHIA CCEECCCEEEEECCCCCEEEECCCCCCCEEEEEECCCEEEEEEEEECCCCCEEEEEEECC PRDGKSEEFWDQFGPGAVGVGWDLSLLGLAWHLETGDSVQEQFAETTWPSSAEGRAFVGA CCCCCCHHHHHHCCCCEEECCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEC SSDGWAAASIAYGTDESAARRAATATTAFFTGVSASE CCCCCEEEEEEECCCHHHHHHHHHHHHHHEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA