| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is smeIM [H]
Identifier: 103486455
GI number: 103486455
Start: 991065
End: 992204
Strand: Direct
Name: smeIM [H]
Synonym: Sala_0965
Alternate gene names: 103486455
Gene position: 991065-992204 (Clockwise)
Preceding gene: 103486454
Following gene: 103486456
Centisome position: 29.63
GC content: 65.09
Gene sequence:
>1140_bases ATGGGTGTGATGGAACGGGTGAAGGCGCCGGCGAGGAAGCTGCGGACGCCGGCGGTTGCGCCCGCGGACCTGCCGCTCGA CAGCATCCTGCAGGGCGATTGCGTCGCGATGATGCGCGGCCTGCCCGCGGCGTCGGTCGACATGATCTTTGCCGATCCGC CGTACAACCTTCAGCTCGGTGGCGATTTGCTGCGCCCCGACGGCAGTCAGGTCGATGCGGTCGACGACGACTGGGACAAG TTCGACAGTCTGGCGACCTATGACCGCTTCACCCATGCCTGGCTGAAGGAAGCCAGGCGTATCCTGAAACCCGGCGGCAG CATCTGGGTCATCGGCAGCTATCACAATATCTTCCGCGTCGGCGCCGCGCTCCAGGACCAGGGATACTGGATCCTCAACG ACATCGTGTGGCGCAAGGCGAATCCGATGCCCAATTTCAAGGGCACGCGCTTTACCAACGCGCATGAGACGCTGATCTGG GCGTCGATGGGCGAGAAGGCGCGCTATACCTTCAACTATCGCGCGATGAAGACGCTGAACGACGAGCTTCAGATGCGCAG CGACTGGCTGATCCCGATCTGCGGCGGGCCGGAACGGCTGAAGAAGGGCGGGCACAAGGTCCACCCGACGCAAAAGCCCG AGGCCTTGCTCTATCGCATCCTGCTCGCCTGCTCGAACCCCGGCGACGTGATCCTCGATCCCTTTTTCGGAACCGGCACG ACGGGCGCGGTCGCGAAGCGGCTGGGGCGCCACTATATCGGCATCGAGCGCGAGGATGACTATATCGCGGCGGCGAAGGA GCGTATCGAACTGGCGCTGCCGCTCGACGAAAGCGCGGTGAAGACGATGATGGCGCCCAAGGCCGCCACGCGCGTCGCGT TTGGCACGCTCGTCGAATGCGGGTTGATCGCGCCGGGGACCGTGCTGACCGATGCCAAGCGCCGCTGGAAAGCGAAAGTG CGCGTCGATGGCAGCCTCGATTGCGAGGGGCAGGCGCCGGGGTCGATCCACAAGGTCGGCGCGGGTGTGCAGGGTGCGCC GAGCTGCAACGGCTGGACCTTCTGGCATGTCGATACGGGTCAGGAGTTGCGCGTGATCGACGCGGTGCGGCAGGACTGGT TGCTGGCGAACGAGGCCTGA
Upstream 100 bases:
>100_bases TTAACCATTGTGACACCGGGAATCCCTAGAATCCGTGGCTTGACGGCGGACTCTGCCGGACTCATCAGGGACATCTTTCG ATCGAGCAACGGGGTGACGC
Downstream 100 bases:
>100_bases CATCATACGTCATTGCGAGGAGCGGAGCGACGAAGCAATCTCCACCTATCGGCGCGCGTCCCCGGTGGCTGGAGATTGCT TCGCTTCGCTCGCAATGACG
Product: DNA methylase N-4/N-6
Products: NA
Alternate protein names: M.SmeI; Adenine-specific methyltransferase SmeIP; M.CcrMI ortholog; Modification methylase SmeIP; M.SmeIP [H]
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MGVMERVKAPARKLRTPAVAPADLPLDSILQGDCVAMMRGLPAASVDMIFADPPYNLQLGGDLLRPDGSQVDAVDDDWDK FDSLATYDRFTHAWLKEARRILKPGGSIWVIGSYHNIFRVGAALQDQGYWILNDIVWRKANPMPNFKGTRFTNAHETLIW ASMGEKARYTFNYRAMKTLNDELQMRSDWLIPICGGPERLKKGGHKVHPTQKPEALLYRILLACSNPGDVILDPFFGTGT TGAVAKRLGRHYIGIEREDDYIAAAKERIELALPLDESAVKTMMAPKAATRVAFGTLVECGLIAPGTVLTDAKRRWKAKV RVDGSLDCEGQAPGSIHKVGAGVQGAPSCNGWTFWHVDTGQELRVIDAVRQDWLLANEA
Sequences:
>Translated_379_residues MGVMERVKAPARKLRTPAVAPADLPLDSILQGDCVAMMRGLPAASVDMIFADPPYNLQLGGDLLRPDGSQVDAVDDDWDK FDSLATYDRFTHAWLKEARRILKPGGSIWVIGSYHNIFRVGAALQDQGYWILNDIVWRKANPMPNFKGTRFTNAHETLIW ASMGEKARYTFNYRAMKTLNDELQMRSDWLIPICGGPERLKKGGHKVHPTQKPEALLYRILLACSNPGDVILDPFFGTGT TGAVAKRLGRHYIGIEREDDYIAAAKERIELALPLDESAVKTMMAPKAATRVAFGTLVECGLIAPGTVLTDAKRRWKAKV RVDGSLDCEGQAPGSIHKVGAGVQGAPSCNGWTFWHVDTGQELRVIDAVRQDWLLANEA >Mature_378_residues GVMERVKAPARKLRTPAVAPADLPLDSILQGDCVAMMRGLPAASVDMIFADPPYNLQLGGDLLRPDGSQVDAVDDDWDKF DSLATYDRFTHAWLKEARRILKPGGSIWVIGSYHNIFRVGAALQDQGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWA SMGEKARYTFNYRAMKTLNDELQMRSDWLIPICGGPERLKKGGHKVHPTQKPEALLYRILLACSNPGDVILDPFFGTGTT GAVAKRLGRHYIGIEREDDYIAAAKERIELALPLDESAVKTMMAPKAATRVAFGTLVECGLIAPGTVLTDAKRRWKAKVR VDGSLDCEGQAPGSIHKVGAGVQGAPSCNGWTFWHVDTGQELRVIDAVRQDWLLANEA
Specific function: This methylase recognizes the double-stranded sequence GANTC and causes specific methylation on A-2 on both strands. Ccrm-mediated methylation has important cellular functions. Appears to contribute to the accurate cell-cycle control of DNA replication an
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI87082238, Length=267, Percent_Identity=32.9588014981273, Blast_Score=116, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 41852; Mature: 41720
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVMERVKAPARKLRTPAVAPADLPLDSILQGDCVAMMRGLPAASVDMIFADPPYNLQLG CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCEEEC GDLLRPDGSQVDAVDDDWDKFDSLATYDRFTHAWLKEARRILKPGGSIWVIGSYHNIFRV CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH GAALQDQGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASMGEKARYTFNYRAMKTLN CCHHCCCCCEEEEHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEEEEHHHHHHH DELQMRSDWLIPICGGPERLKKGGHKVHPTQKPEALLYRILLACSNPGDVILDPFFGTGT HHHHHCCCCEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCC TGAVAKRLGRHYIGIEREDDYIAAAKERIELALPLDESAVKTMMAPKAATRVAFGTLVEC HHHHHHHHCHHHCCCCCCCCHHHHHHHCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHH GLIAPGTVLTDAKRRWKAKVRVDGSLDCEGQAPGSIHKVGAGVQGAPSCNGWTFWHVDTG CCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCC QELRVIDAVRQDWLLANEA CCCHHHHHHHHHCEECCCC >Mature Secondary Structure GVMERVKAPARKLRTPAVAPADLPLDSILQGDCVAMMRGLPAASVDMIFADPPYNLQLG CHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCEEEC GDLLRPDGSQVDAVDDDWDKFDSLATYDRFTHAWLKEARRILKPGGSIWVIGSYHNIFRV CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH GAALQDQGYWILNDIVWRKANPMPNFKGTRFTNAHETLIWASMGEKARYTFNYRAMKTLN CCHHCCCCCEEEEHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEEEEHHHHHHH DELQMRSDWLIPICGGPERLKKGGHKVHPTQKPEALLYRILLACSNPGDVILDPFFGTGT HHHHHCCCCEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCC TGAVAKRLGRHYIGIEREDDYIAAAKERIELALPLDESAVKTMMAPKAATRVAFGTLVEC HHHHHHHHCHHHCCCCCCCCHHHHHHHCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHH GLIAPGTVLTDAKRRWKAKVRVDGSLDCEGQAPGSIHKVGAGVQGAPSCNGWTFWHVDTG CCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCC QELRVIDAVRQDWLLANEA CCCHHHHHHHHHCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9294447; 11481430 [H]