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The map label for this gene is ybbO [C]

Identifier: 103486454

GI number: 103486454

Start: 989925

End: 990821

Strand: Direct

Name: ybbO [C]

Synonym: Sala_0964

Alternate gene names: 103486454

Gene position: 989925-990821 (Clockwise)

Preceding gene: 103486453

Following gene: 103486455

Centisome position: 29.59

GC content: 67.89

Gene sequence:

>897_bases
ATGAGCAGGGGATTTTCCGCCGATGACGTAGGGCCGCAAATCGGGCGGCGCTTTCTGGTCACCGGCGCCAATGCCGGAAT
CGGGTTCGAGGTGGCGCGGACGCTTGCGGCGCGTGGCGCGCATGTCGTGCTCGCGTGCCGCGATGCGGAAAAGGCCGAGG
CCGCGATGGCACGAATCCGAAGCGATCGGTCCAAAGCCGACCTGTCCTTCCTGCGGCTCGACCTGGCCGACCTCGACCAG
GTGAAGGAGGCGGCCGCGGCGGTGCTTGCGGGACCGCGGATCGACGTGCTCGTCAACAACGCCGGGGTGATGATCCCGCC
GCGGACGCTGACCAAGCAGGGCCATGAGTTGCAATTCGGGGTCAATCATCTGGGCACCTTTGCCTTCACCGGGCTGGTGC
ATACCCACATCGAAGACCGGATCGTCATCACCGGCAGCATCGCGCACAAGAGCGGCGAGATGGATTACAGCGACCTGTCG
GCGACCCGCAGCTATCACAACTGGGCGCGCTATCAGATGAGCAAGCTGGCGAACCTGCTCCATATGTTCGAGCTCGACCG
GCGGCTCAGCGCTGCCGGGCGGGCGACGCAGGCGATCGGATGTCATCCCGGCGTCGCACTCACCGAATTGCAGCGGCACC
TGCCGTTGCCGCTCCGCTACATGACGCCGCTCGCCGCACCCTTTTTCAACAGTGCGGCGCAGGGCGCGTGGCCGACCTTG
CAGGCCGCGACCGGCGCGCATGTGCAGGGCGGCGACTATCTGGGGCCGCAGGGGCTGGGCGAAGTTTCGGGGCGGTCGGG
CCCGGCGCGCGCGAGCCGCGCGGCGCGCGATCCGAAACTGGCGCGCGAGCTGTGGGAGCGGTCGGTCGAACTGACGGGGG
TCGATCCGGGGATTTAG

Upstream 100 bases:

>100_bases
GCTGCGTCGCCATGGCCCGACGCCGCACCATCGGACCAGTTTCGCCCCGGTTGCGCAATTGCAACTGGTCTGACCGCCCA
CAGCCTGAAAGGGGAAGGCG

Downstream 100 bases:

>100_bases
CTTTCAAACCTTCTCCCGCAAGGGGAGAAGGTTTTTCCGCTTTTTTTTGCCGGTGAGTCCCCGCCGCCACACCACCAGTG
GTTGAGTCCCCGTGCCGCGA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSRGFSADDVGPQIGRRFLVTGANAGIGFEVARTLAARGAHVVLACRDAEKAEAAMARIRSDRSKADLSFLRLDLADLDQ
VKEAAAAVLAGPRIDVLVNNAGVMIPPRTLTKQGHELQFGVNHLGTFAFTGLVHTHIEDRIVITGSIAHKSGEMDYSDLS
ATRSYHNWARYQMSKLANLLHMFELDRRLSAAGRATQAIGCHPGVALTELQRHLPLPLRYMTPLAAPFFNSAAQGAWPTL
QAATGAHVQGGDYLGPQGLGEVSGRSGPARASRAARDPKLARELWERSVELTGVDPGI

Sequences:

>Translated_298_residues
MSRGFSADDVGPQIGRRFLVTGANAGIGFEVARTLAARGAHVVLACRDAEKAEAAMARIRSDRSKADLSFLRLDLADLDQ
VKEAAAAVLAGPRIDVLVNNAGVMIPPRTLTKQGHELQFGVNHLGTFAFTGLVHTHIEDRIVITGSIAHKSGEMDYSDLS
ATRSYHNWARYQMSKLANLLHMFELDRRLSAAGRATQAIGCHPGVALTELQRHLPLPLRYMTPLAAPFFNSAAQGAWPTL
QAATGAHVQGGDYLGPQGLGEVSGRSGPARASRAARDPKLARELWERSVELTGVDPGI
>Mature_297_residues
SRGFSADDVGPQIGRRFLVTGANAGIGFEVARTLAARGAHVVLACRDAEKAEAAMARIRSDRSKADLSFLRLDLADLDQV
KEAAAAVLAGPRIDVLVNNAGVMIPPRTLTKQGHELQFGVNHLGTFAFTGLVHTHIEDRIVITGSIAHKSGEMDYSDLSA
TRSYHNWARYQMSKLANLLHMFELDRRLSAAGRATQAIGCHPGVALTELQRHLPLPLRYMTPLAAPFFNSAAQGAWPTLQ
AATGAHVQGGDYLGPQGLGEVSGRSGPARASRAARDPKLARELWERSVELTGVDPGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI225579078, Length=294, Percent_Identity=39.7959183673469, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI186928839, Length=287, Percent_Identity=38.3275261324042, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI166795268, Length=287, Percent_Identity=36.9337979094077, Blast_Score=161, Evalue=7e-40,
Organism=Homo sapiens, GI10190746, Length=310, Percent_Identity=34.5161290322581, Blast_Score=151, Evalue=7e-37,
Organism=Homo sapiens, GI7706523, Length=292, Percent_Identity=36.986301369863, Blast_Score=135, Evalue=4e-32,
Organism=Homo sapiens, GI193804850, Length=303, Percent_Identity=30.3630363036304, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI146231950, Length=298, Percent_Identity=37.5838926174497, Blast_Score=131, Evalue=9e-31,
Organism=Homo sapiens, GI19923931, Length=259, Percent_Identity=37.8378378378378, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17558006, Length=291, Percent_Identity=32.6460481099656, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17532791, Length=297, Percent_Identity=31.3131313131313, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI193207620, Length=303, Percent_Identity=28.7128712871287, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17532805, Length=294, Percent_Identity=29.9319727891156, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71992402, Length=294, Percent_Identity=29.9319727891156, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17535059, Length=317, Percent_Identity=30.9148264984227, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115533174, Length=290, Percent_Identity=29.6551724137931, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI115533172, Length=290, Percent_Identity=29.6551724137931, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI72001364, Length=189, Percent_Identity=32.8042328042328, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI32565532, Length=208, Percent_Identity=30.2884615384615, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324820, Length=307, Percent_Identity=28.9902280130293, Blast_Score=95, Evalue=1e-20,
Organism=Drosophila melanogaster, GI22024069, Length=297, Percent_Identity=37.037037037037, Blast_Score=169, Evalue=2e-42,
Organism=Drosophila melanogaster, GI19921754, Length=297, Percent_Identity=37.3737373737374, Blast_Score=156, Evalue=1e-38,
Organism=Drosophila melanogaster, GI28573296, Length=297, Percent_Identity=36.026936026936, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24586328, Length=292, Percent_Identity=35.6164383561644, Blast_Score=149, Evalue=2e-36,
Organism=Drosophila melanogaster, GI45554248, Length=246, Percent_Identity=40.650406504065, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24640117, Length=246, Percent_Identity=40.650406504065, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI161076371, Length=290, Percent_Identity=33.7931034482759, Blast_Score=131, Evalue=7e-31,
Organism=Drosophila melanogaster, GI45553409, Length=293, Percent_Identity=31.3993174061433, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24647948, Length=293, Percent_Identity=31.3993174061433, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24647946, Length=293, Percent_Identity=31.3993174061433, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI20129347, Length=291, Percent_Identity=31.2714776632302, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24656154, Length=291, Percent_Identity=30.5841924398625, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI19922628, Length=291, Percent_Identity=30.5841924398625, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24647931, Length=306, Percent_Identity=29.7385620915033, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=198, Percent_Identity=30.3030303030303, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31973; Mature: 31842

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRGFSADDVGPQIGRRFLVTGANAGIGFEVARTLAARGAHVVLACRDAEKAEAAMARIR
CCCCCCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH
SDRSKADLSFLRLDLADLDQVKEAAAAVLAGPRIDVLVNNAGVMIPPRTLTKQGHELQFG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCHHHHCCCCEEEEC
VNHLGTFAFTGLVHTHIEDRIVITGSIAHKSGEMDYSDLSATRSYHNWARYQMSKLANLL
HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HMFELDRRLSAAGRATQAIGCHPGVALTELQRHLPLPLRYMTPLAAPFFNSAAQGAWPTL
HHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
QAATGAHVQGGDYLGPQGLGEVSGRSGPARASRAARDPKLARELWERSVELTGVDPGI
HHCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCEEECCCCCCC
>Mature Secondary Structure 
SRGFSADDVGPQIGRRFLVTGANAGIGFEVARTLAARGAHVVLACRDAEKAEAAMARIR
CCCCCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH
SDRSKADLSFLRLDLADLDQVKEAAAAVLAGPRIDVLVNNAGVMIPPRTLTKQGHELQFG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCHHHHCCCCEEEEC
VNHLGTFAFTGLVHTHIEDRIVITGSIAHKSGEMDYSDLSATRSYHNWARYQMSKLANLL
HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HMFELDRRLSAAGRATQAIGCHPGVALTELQRHLPLPLRYMTPLAAPFFNSAAQGAWPTL
HHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
QAATGAHVQGGDYLGPQGLGEVSGRSGPARASRAARDPKLARELWERSVELTGVDPGI
HHCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]